Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00844 ATGTTTCTTCTTAAAAGAAGAGGCTCCCATAACAATGGAGAAACTGCTGATTCTTCCCAGCAGGATGGGAAGATCACTGAACTAAGAGGTGCCTTGGGGCACCTATCCGGTCGCAGTTTAAAGTACTGTAATGATGCCTGCCTTCGAAGATATTTGGCTGCGCGGAATTGGGATCTTCATAAAGCAAAGAAAATGGTGGAGGACTCGCTCAAATGGAGGGCAACCTATAAGCCCGAGGAAATCAGATGGCATGAAGTAGCACATGAAGGTGAAACAGGCAAATCTTTTAGAGCAAATTTCTACGACCGTTTCGGTCGAACAGTGCTCATATCCAGGCCAGGAATGCAGAATACAAACTCGCCGGAAGACAATGTTCGACATGTGGTGTATCTTTTAGAGAACACCATTTTGAACCTTCGTAATGGCCAAGAACAGATAGCGTGGCTGATAGATTTTACTGGATTTACAATGAACACCAACATCTCTGTCAAAGCAGCAAGAGGGATTATTAACATACTACAGAGCCACTATCCAGAAAGGCTTGCTATTTCATTTCTCTACAACCCTCCAAGAATCTTTCAAGCCTTTTGGAAGGCTATCAGGTATTTTATCGATCCAAAGACAGGTCAGAAAGTACATTTCATATACCCCAACAACAAGGATAGTGTAGAGCTAATGAAATCTTTCTTCGATATGGAAAACCTTCCAAGTGTATTTGGAGGAAAAGCCACTCTAACATATGACCATGAAGAGTTCTCAAAAATGATGGCAATGGACGACATCAAAACTGCCAAACTTTGGGAGTTGAACGACAAGCCTTCCCATAATATGAATGGGCATCCAGGCCTAGAGGCCGCACAAGAAGAGGGAATACCGATCTCCGTTTCTTCGGATTAG 897 43.14 MFLLKRRGSHNNGETADSSQQDGKITELRGALGHLSGRSLKYCNDACLRRYLAARNWDLHKAKKMVEDSLKWRATYKPEEIRWHEVAHEGETGKSFRANFYDRFGRTVLISRPGMQNTNSPEDNVRHVVYLLENTILNLRNGQEQIAWLIDFTGFTMNTNISVKAARGIINILQSHYPERLAISFLYNPPRIFQAFWKAIRYFIDPKTGQKVHFIYPNNKDSVELMKSFFDMENLPSVFGGKATLTYDHEEFSKMMAMDDIKTAKLWELNDKPSHNMNGHPGLEAAQEEGIPISVSSD 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5564448 5584823 + MELO3C007825.2.1 Cme08g00844 335107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00844 298 Gene3D - 6 276 IPR036865 -
Cme08g00844 298 Pfam CRAL/TRIO, N-terminal domain 43 68 IPR011074 -
Cme08g00844 298 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 10 289 - -
Cme08g00844 298 MobiDBLite consensus disorder prediction 277 298 - -
Cme08g00844 298 SUPERFAMILY CRAL/TRIO domain 83 259 IPR036865 -
Cme08g00844 298 PANTHER GH16843P 10 289 - -
Cme08g00844 298 MobiDBLite consensus disorder prediction 1 23 - -
Cme08g00844 298 SMART CRAL_TRIO_N_2 44 69 IPR011074 -
Cme08g00844 298 SUPERFAMILY CRAL/TRIO N-terminal domain 17 85 IPR036273 -
Cme08g00844 298 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 101 247 IPR001251 -
Cme08g00844 298 Pfam CRAL/TRIO domain 101 241 IPR001251 -
Cme08g00844 298 SMART sec14_4 89 244 IPR001251 -
Cme08g00844 298 CDD SEC14 102 242 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00844 - - - csv:101219012 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00844 Cme-Chr8:5564448 Cme08g00885 Cme-Chr8:5807919 1.26E-12 dispersed
Cme02g01989 Cme-Chr2:26156154 Cme08g00844 Cme-Chr8:5564448 5.40E-13 transposed
Cme06g02572 Cme-Chr6:32744191 Cme08g00844 Cme-Chr8:5564448 3.92E-18 transposed
Cme07g00921 Cme-Chr7:9662203 Cme08g00844 Cme-Chr8:5564448 4.27E-30 transposed
Cme07g01723 Cme-Chr7:22736163 Cme08g00844 Cme-Chr8:5564448 8.30E-150 transposed
Cme07g01996 Cme-Chr7:25056163 Cme08g00844 Cme-Chr8:5564448 2.76E-23 transposed
Cme08g01927 Cme-Chr8:23765249 Cme08g00844 Cme-Chr8:5564448 1.11E-71 transposed
Cme11g01279 Cme-Chr11:19546995 Cme08g00844 Cme-Chr8:5564448 1.86E-07 transposed
Cme04g00574 Cme-Chr4:5212792 Cme08g00844 Cme-Chr8:5564448 9.21E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00844 Cme_Chr08 FPKM 7.278804 6.861896 11.917131 13.531417 16.713755 13.931742 17.670727 20.996712 21.157742 22.870182