Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00847 ATGGAGGCTAAATTTTTTCGGTTCCTTAAGATTGTGGGAGTTGGGTACAAAGCCAGAGCCGAAGCAGCAGGACGCCTCTTGTATCTTAAACTGGGATACAGTCATGAAGTTGAGCTAACCGTTCCACCAGCTGTTCGTGTCTTTTGCTTCAAAAACAATGTGGTATGTTGCACAGGGATTGACAAATATAGGGTACACCAATTTGCTGCTGCAGTTCGTAGCTGTAAGCCACCAGAAGTGTACAAAGGCAAGGGCATCATGTATATCGACGAGGTCATAAAGAGGAAACAAGGAAAGAAGTCTAAATAA 309 43.69 MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNNVVCCTGIDKYRVHQFAAAVRSCKPPEVYKGKGIMYIDEVIKRKQGKKSK 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5585807 5588887 + MELO3C007828.2.1 Cme08g00847 335110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00847 102 Gene3D - 5 102 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cme08g00847 102 PANTHER RIBOSOMAL PROTEIN L6-RELATED 1 101 - -
Cme08g00847 102 ProSitePatterns Ribosomal protein L6 signature 1. 78 86 IPR002358 GO:0003735|GO:0005840|GO:0006412
Cme08g00847 102 PRINTS Ribosomal protein L6 signature 23 39 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cme08g00847 102 PRINTS Ribosomal protein L6 signature 65 86 IPR019906 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cme08g00847 102 Pfam Ribosomal protein L6 12 88 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cme08g00847 102 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 101 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cme08g00847 102 SUPERFAMILY Ribosomal protein L6 5 100 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00847 K02933 RP-L6, MRPL6, rplF; large subunit ribosomal protein L6 - csv:101220210 207.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00420 Cme-Chr1:2964680 Cme08g00847 Cme-Chr8:5585807 2.25E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g973 . . . . . . . . . . Cma03g00749 . Car03g00684 . . . Cpe10g00613 Bhi03g01297 . . . Hepe04g1513 . . Cla01g01907 . . Cco04g1711 . Cmu01g1888 . . . . . Lsi01g00675 . . Cme08g00847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03239 Chy02g00650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008885 2 4 2 2 2 0 1 1 0 1 1 0 1 1 2 0 1 0 1 0 1 1 2 0 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00847 Cme_Chr08 FPKM 7.18718 12.801273 11.377591 10.401721 22.471083 26.851604 16.970264 9.046318 6.834716 5.334157