Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00848 ATGGGGTTGCTTAGTATCATTCGAAAAATCAAAAGGAAAGAGAAGGAAATGCGTATACTTATGGTAGGCCTTGACAACTCTGGGAAAACTACCATCGTTTTAAAGATCAATGGGGAAGATACCAGCGTTATCAGCCCTACGCTCGGATTTAATATCAAGACTATCACCTATCACAAGTACACACTTAACATATGGGATGTTGGGGGCCAAAAGACTATAAGATCATATTGGAGGAACTATTTTGAGCAGACGGATGGACTAGTATGGGTGGTTGACAGTTCCGATCTTAGAAGATTGGATGATTGCAAATCGGAACTTGATAATCTTTTGAAAGAAGAGAGACTTTCTGGAGCATCATTGCTTATTCTTGCTAATAAGCAGGATATAAAAGGAGCCCTTTCTCCAGAGGAAATTGCTAAGGTATTGAATTTGGAAGCTATGGACAAAACACGTCACTGGAAAATTGTTGGTTGTAGCGCATACACTGGCGAGGGGCTGTTGGAGGGTTTCAATTGGTTGGTTCAAGACATTGCTTCCCGAATTTATGTTTTAGATTAA 558 40.14 MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYHKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKSELDNLLKEERLSGASLLILANKQDIKGALSPEEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFNWLVQDIASRIYVLD 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5589145 5593068 - MELO3C007829.2.1 Cme08g00848 335111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00848 185 SMART rab_sub_5 17 180 - -
Cme08g00848 185 Pfam ADP-ribosylation factor family 4 177 IPR006689 GO:0003924|GO:0005525
Cme08g00848 185 Gene3D - 5 182 IPR027417 -
Cme08g00848 185 SMART arf_sub_2 1 181 - -
Cme08g00848 185 SMART sar_sub_1 3 177 IPR006689 GO:0003924|GO:0005525
Cme08g00848 185 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED 1 185 IPR044612 GO:0003924
Cme08g00848 185 PRINTS GTP-binding SAR1 protein signature 18 41 IPR006689 GO:0003924|GO:0005525
Cme08g00848 185 PRINTS GTP-binding SAR1 protein signature 46 70 IPR006689 GO:0003924|GO:0005525
Cme08g00848 185 PRINTS GTP-binding SAR1 protein signature 73 98 IPR006689 GO:0003924|GO:0005525
Cme08g00848 185 PRINTS GTP-binding SAR1 protein signature 151 175 IPR006689 GO:0003924|GO:0005525
Cme08g00848 185 ProSiteProfiles small GTPase Arf family profile. 10 177 - -
Cme08g00848 185 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2 1 185 - -
Cme08g00848 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 179 IPR027417 -
Cme08g00848 185 TIGRFAM small_GTP: small GTP-binding protein domain 15 150 IPR005225 GO:0005525
Cme08g00848 185 CDD Arl2 3 176 IPR045873 GO:0003924
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00848 K07943 ARL2; ADP-ribosylation factor-like protein 2 - csv:101219492 352.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g02103 Cme-Chr7:25723495 Cme08g00848 Cme-Chr8:5589145 1.05E-25 dispersed
Cme08g00848 Cme-Chr8:5589145 Cme09g01503 Cme-Chr9:20192736 8.36E-46 dispersed
Cme08g00848 Cme-Chr8:5589145 Cme09g00395 Cme-Chr9:3542503 5.36E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g974 . . . . . . . . . . . Cma07g00488 . Car07g00429 Sed14g1119 Cpe19g00808 . Bhi03g01298 Tan03g1980 Cmetu08g1666 . Hepe04g1514 . . Cla01g01908 Cam01g1996 Cec04g1649 . . . Cre04g1565 . . Cone6ag1622 Cone9ag1547 Lsi01g00674 . . Cme08g00848 . . . . . . . . . . Cmo07g00486 . . . . . . . . . . . . . . . . . . . . . Csa06g03240 Chy02g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004650 3 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 2 1 2 1 1 1 1 2 1 2 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00848 Cme_Chr08 FPKM 9.390656 9.099914 12.138082 11.982482 19.634857 24.18647 22.334934 15.327125 14.114468 15.602244