Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00849 ATGGCCAAAAGAATCCGCCGGAAATTCCTCTTTCAGTCGGAGTCTCCAACCGGCGCCGTTCCTCTCTCTCCCTCGTCCTCCTCCAAGATTCCGTTCCGATCCACAAAAGTTCGTAAGATTTCCTCCAATCAAGAACCGGCCAAACCACAATTTTCAGCTCCCGACGGTTATAACCCGACCCGAACATTCCCGAACCTGGCCGATCCCGTCAAATCGTTGTCGTCTTTGGATGAAATTTCTACAGCGATCAATCATTTACGTCGTTCGGATCCTCTTCTGATAAGTTTACTAGATTCCTGCGAATCACCCCATTTCAAGTCTAATCCACCGTTCTTAGCACTAACGAAGAGCATCCTCTACCAACAACTCGCAACAAAGGCCGCCGAATCGATCTACAATCGCTTCGCCTCGCTATGCGGCGGAGAGGCGTCGGTACTGCCGGACACCGTGCTCGGACTCTCGCCGCAACAGCTGCGAGTAGTCGGAGTTTCGGGGAGGAAAGCAAGTTACCTCCATGACCTAGCGACGAAATTCATAGAGGGGAATTTATCAAATTCATTGATTCTGGAGATGGACGACGAGACTCTATTGGGGGAGTTGACGGCGGTGAAGGGAATCGGCGTTTGGTCGGTGCATATGTTCATGATATTTACTCTGCATCGGCCGGATGTGCTGCCGGTGGGGGATTTGGGAGTGAGAAAAGGGGTGCAGAGGTTGTACGGACTAAAGGAATTGCCGAAGCCGGCGGAGATGGAGAAACTTTGTGAAAAATGGAAGCCTTACAGATCGATCGGAGCTTGGTATATGTGGAGGCTAATGGAAGAGAAGGGAGTTGTGAAGAAGGGTTCTGATTTACCGGATAACATGGAAAACAGGGGGTAG 882 50.68 MAKRIRRKFLFQSESPTGAVPLSPSSSSKIPFRSTKVRKISSNQEPAKPQFSAPDGYNPTRTFPNLADPVKSLSSLDEISTAINHLRRSDPLLISLLDSCESPHFKSNPPFLALTKSILYQQLATKAAESIYNRFASLCGGEASVLPDTVLGLSPQQLRVVGVSGRKASYLHDLATKFIEGNLSNSLILEMDDETLLGELTAVKGIGVWSVHMFMIFTLHRPDVLPVGDLGVRKGVQRLYGLKELPKPAEMEKLCEKWKPYRSIGAWYMWRLMEEKGVVKKGSDLPDNMENRG 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5593846 5595119 - MELO3C007830.2.1 Cme08g00849 335112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00849 293 CDD ENDO3c 111 272 IPR003265 GO:0006284
Cme08g00849 293 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 3 282 - -
Cme08g00849 293 PANTHER HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN 3 282 - -
Cme08g00849 293 MobiDBLite consensus disorder prediction 14 57 - -
Cme08g00849 293 Gene3D - 85 271 - -
Cme08g00849 293 SUPERFAMILY DNA-glycosylase 107 273 IPR011257 GO:0003824|GO:0006281
Cme08g00849 293 Gene3D Hypothetical protein; domain 2 110 221 - -
Cme08g00849 293 MobiDBLite consensus disorder prediction 16 57 - -
Cme08g00849 293 Pfam HhH-GPD superfamily base excision DNA repair protein 116 259 IPR003265 GO:0006284
Cme08g00849 293 SMART endo3end 119 274 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00849 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - csv:101219253 501.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00561 Cme-Chr4:5042247 Cme08g00849 Cme-Chr8:5593846 2.04E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g979 . . . Bda10g00135 . . . Bma15g00996 . . Cma03g00747 . Car03g00681 . Sed14g1122 . Cpe10g00616 Bhi03g01301 Tan03g1983 Cmetu08g0437 . Hepe04g1517 . . Cla01g01912 Cam01g1999 Cec04g1654 Cco04g1716 Clacu01g2018 Cmu01g1892 Cre04g1568 . . Cone6ag1624 . Lsi01g00672 . . Cme08g00849 . Blo06g00134 . . Bpe10g00120 . . . . Cmo03g00774 . . . . . . . . . . . . . . . . . . . . . . Csa06g03241 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011094 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00849 Cme_Chr08 FPKM 12.184462 15.039516 25.308163 25.288074 13.921863 12.437558 12.365211 27.234138 23.627068 25.182875