Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00852 ATGGAGACGAGAAGTGAAGATGAGGAAATAGGAACTCCTAATTCACCTTTGTGCTATAATAATCCATCGTCAAATAGGGAATCTTTAATCAAACTGCCTAATTTGGATCACCCATTTCTCACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTTCACTTCTCTACTCATCAGAAATCGACTCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCAGATCCTCCAATCCAGTCGTCCATTCCTGCCTCTCCGTCATCTGCTGCTACTCCGACTCCGCTGGCAATTGCTAGCACCAGCAGCAGATTGATCTCAAGAACGCCATCATTTGCAGGGGCAACAGACAACACTATTCGTTCATCGGTAATCCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACTGGTGGCCATGTTCTTGATGGCTGCGGCGAGTTCATGCCAAATGGAGAAGATGGAACGACTGAGGCCATGAAATGTGCAGCTTGTGAATGCCATCGGAACTTTCACCGGAAAGAAATGAAAGATGATCCACCCTTGCAGCAAGCTTTACCCACTGGTTTCTTCGTCTCCAACTCCATCAGAAACAATGGCCATCGCACTGATAGAACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTACCAGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCCGATGAGTCTTCGAGTGAGGATCTGAACATGTATCACCCCTCTAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAATAAAGAAACGATTTAGGACAAAGTTCACGCAAGGACAGAAGGACAAGATGGAAGAATTTGCTGAAAAATTGGGGTGGAAAATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTTTGCGCTGAGGTGGGGGTAAGGAGACAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGGCATGAAGAAGAAACAAATGTAA 1011 45.7 METRSEDEEIGTPNSPLCYNNPSSNRESLIKLPNLDHPFLTAADRRRDHTVPQLHFSTHQKSTLHHIHKQHTRDHPEATPDPPIQSSIPASPSSAATPTPLAIASTSSRLISRTPSFAGATDNTIRSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTTEAMKCAACECHRNFHRKEMKDDPPLQQALPTGFFVSNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLIKKRFRTKFTQGQKDKMEEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQGMKKKQM 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5615815 5617560 + MELO3C007832.2.1 Cme08g00852 335115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00852 336 Gene3D - 261 333 - -
Cme08g00852 336 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 131 182 IPR006456 -
Cme08g00852 336 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 132 181 IPR006456 -
Cme08g00852 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 62 334 - -
Cme08g00852 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 62 334 - -
Cme08g00852 336 SUPERFAMILY Homeodomain-like 271 333 IPR009057 -
Cme08g00852 336 Pfam ZF-HD protein dimerisation region 130 182 IPR006456 -
Cme08g00852 336 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 272 329 IPR006455 -
Cme08g00852 336 MobiDBLite consensus disorder prediction 58 99 - -
Cme08g00852 336 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00852 - - - csv:101220687 623.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01827 Cme-Chr3:26656696 Cme08g00852 Cme-Chr8:5615815 2.64E-53 dispersed
Cme08g00739 Cme-Chr8:4928339 Cme08g00852 Cme-Chr8:5615815 7.12E-57 dispersed
Cme08g00852 Cme-Chr8:5615815 Cme10g01673 Cme-Chr10:22954692 2.19E-53 dispersed
Cme07g01665 Cme-Chr7:22285844 Cme08g00852 Cme-Chr8:5615815 2.15E-60 transposed
Cme03g01952 Cme-Chr3:27478925 Cme08g00852 Cme-Chr8:5615815 7.70E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41820 PF04770 ZF-HD_dimer 5.30E-30 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00852 Cme_Chr08 FPKM 40.367947 42.65287 42.240898 43.412735 25.976542 26.901043 28.080538 30.352016 30.971622 33.609528