Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00854 ATGTCATTCAAAAGCTTTTTTCGCGAGCTAAGGGAAATGAAAAATGGGATTAGAATCAGACCGAAGCGAGGGGGAGAAGGGAGGAATTGGCGAAGTCGTACAAGGGCACATATTGCACCTGATGAGGTGCCTCCTCAACCTGAAGTAATACAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGAGTTGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTTGTTCTTTTCTGTGCTTCAGTTTGCAAGTCATGGAGAAAAATTACACAGGAAATTGTTAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCGCTTAAACAGCCGGGACCTCGAGACTCTCCAATTCAATGCTATGTTAGAAGGCATAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAATAAGAAGGGCTACGGGTACAGATTTTGTTATATCTTTGGTAGCTGATGATTTTTCTTGGGCTTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCTCAAGATTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGAACGACAGAGCAATCAATCAAATCGAAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGCAACTACTCTATAGGGTCAGTCTCTTATGAGCTTAACATTCTACGAACTAGAGGACCACGAAGAATGCGCTGTGTCATGCAGTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCAACCTCATTCTCGTCCTGCCTCAATGACCATCATCACCACCCACCTTTACCGACTTCTAAAGGAAAGAAGTCAGACATAGATTTCAGTTCCACAAGTATCACTGAGCCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCCAGATGGCATGAACAGCTCCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAAAATTTCCAACTCGTGGCCGATGTCGATCCGGCCCTTGATGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGAAAAATTGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCGCTTTCCAAGCCTTTGCGATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1245 44.98 MSFKSFFRELREMKNGIRIRPKRGGEGRNWRSRTRAHIAPDEVPPQPEVIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRKITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRIRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGSRFTMYDSQPPVLTAERQSNQSNRRFHAKQVSPTMSACNYSIGSVSYELNILRTRGPRRMRCVMQSIPASCIQQGGNAPTPTSFSSCLNDHHHHPPLPTSKGKKSDIDFSSTSITEPPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5627200 5630655 - MELO3C007834.2.1 Cme08g00854 335117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00854 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Cme08g00854 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Cme08g00854 414 Pfam Tub family 116 409 IPR000007 -
Cme08g00854 414 PANTHER TUBBY-RELATED 1 414 - -
Cme08g00854 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Cme08g00854 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Cme08g00854 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Cme08g00854 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Cme08g00854 414 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Cme08g00854 414 MobiDBLite consensus disorder prediction 278 310 - -
Cme08g00854 414 Gene3D - 49 102 - -
Cme08g00854 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00854 K19600 TUB, TULP; tubby and related proteins - csv:101221704 822.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01306 Cme-Chr6:10907911 Cme08g00854 Cme-Chr8:5627200 1.51E-148 dispersed
Cme08g00854 Cme-Chr8:5627200 Cme11g01977 Cme-Chr11:27746532 8.58E-61 dispersed
Cme04g00548 Cme-Chr4:4844554 Cme08g00854 Cme-Chr8:5627200 1.50E-179 wgd
Cme07g01658 Cme-Chr7:22249029 Cme08g00854 Cme-Chr8:5627200 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g00617 . 1 430 TUB Transcription Factor Family AT1G76900 72.5 1.1e-177 619.8
Cme03g00315 . 1 432 TUB Transcription Factor Family AT1G76900 68.9 4.3e-169 591.3
Cme06g01306 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 1.3e-168 589.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT1G76900 50.2 1.6e-115 413.3
Cme06g00687 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 51.4 2.9e-112 402.5
Cme06g01306 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 7.8e-102 367.1
Cme03g00315 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.3e-93 339.7
Cme03g00617 . 173 430 TUB Transcription Factor Family AT1G25280 67.9 1.1e-92 336.7
Cme06g00687 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.9 9.3e-71 263.8
Cme07g01658 . 177 414 TUB Transcription Factor Family AT1G25280 56.2 9.3e-71 263.8
Cme04g00548 . 180 411 TUB Transcription Factor Family AT1G25280 55.3 8.7e-69 257.3
Cme08g00854 . 176 414 TUB Transcription Factor Family AT1G25280 51.3 6.5e-64 241.1
Cme06g00687 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.8 2.9e-97 352.1
Cme03g00617 . 112 430 TUB Transcription Factor Family AT5G18680 52.6 6.2e-84 307.8
Cme03g00315 . 112 432 TUB Transcription Factor Family AT5G18680 52.1 3.1e-83 305.4
Cme06g01306 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.2e-82 303.5
Cme07g01658 . 115 414 TUB Transcription Factor Family AT5G18680 52.9 3.5e-79 292.0
Cme04g00548 . 116 411 TUB Transcription Factor Family AT5G18680 50.5 1.6e-76 283.1
Cme07g01369 . 115 383 TUB Transcription Factor Family AT5G18680 50.2 7.4e-69 257.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT2G18280 62.1 2.4e-144 508.8
Cme08g00854 . 1 414 TUB Transcription Factor Family AT2G18280 60.1 1.1e-136 483.4
Cme04g00548 . 1 411 TUB Transcription Factor Family AT2G18280 58.2 8.2e-124 440.7
Cme06g01306 . 1 428 TUB Transcription Factor Family AT2G18280 53.4 1.2e-119 426.8
Cme03g00617 . 1 430 TUB Transcription Factor Family AT2G18280 52.9 1.5e-117 419.9
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.3 1.3e-116 416.8
Cme03g00315 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.4e-112 403.3
Cme07g01369 . 52 383 TUB Transcription Factor Family AT2G18280 51.3 8.8e-94 340.9
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.5 1.5e-160 562.8
Cme03g00617 . 1 430 TUB Transcription Factor Family AT2G47900 55.5 2.9e-132 468.8
Cme06g01306 . 1 428 TUB Transcription Factor Family AT2G47900 56.7 1.2e-130 463.4
Cme03g00315 . 1 432 TUB Transcription Factor Family AT2G47900 55.7 7.9e-130 460.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT2G47900 55.9 7.2e-123 437.6
Cme04g00548 . 10 411 TUB Transcription Factor Family AT2G47900 55.7 1.5e-117 419.9
Cme08g00854 . 1 414 TUB Transcription Factor Family AT2G47900 51.4 1.1e-112 403.7
Cme07g01369 . 50 383 TUB Transcription Factor Family AT2G47900 51.4 8.5e-100 360.9
Cme11g01977 CCT,ECH 1 228 TUB Transcription Factor Family AT2G47900 56.5 1.6e-74 276.9
Cme01g02537 . 82 260 TUB Transcription Factor Family AT1G16070 52.7 4.0e-51 198.7
Cme03g00617 . 67 430 TUB Transcription Factor Family AT1G43640 70.8 9.8e-148 520.0
Cme06g01306 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 6.3e-147 517.3
Cme03g00315 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 2.0e-140 495.7
Cme06g00687 CCT,ECH 49 387 TUB Transcription Factor Family AT1G43640 53.4 2.1e-105 379.4
Cme04g00548 . 69 411 TUB Transcription Factor Family AT1G43640 50.5 3.4e-100 362.1
Cme07g01658 . 68 414 TUB Transcription Factor Family AT1G43640 50.3 7.1e-98 354.4
Cme08g00854 . 67 414 TUB Transcription Factor Family AT1G43640 50.1 4.8e-94 341.7
Cme04g00548 . 34 411 TUB Transcription Factor Family AT1G47270 63.9 5.4e-136 481.1
Cme07g01658 . 34 414 TUB Transcription Factor Family AT1G47270 58.3 4.0e-123 438.3
Cme08g00854 . 33 414 TUB Transcription Factor Family AT1G47270 56.3 2.4e-120 429.1
Cme06g01306 . 1 428 TUB Transcription Factor Family AT1G47270 52.3 2.6e-114 409.1
Cme03g00617 . 30 430 TUB Transcription Factor Family AT1G47270 52.2 8.4e-113 404.1
Cme03g00315 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 3.2e-112 402.1
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.2 2.4e-104 375.9
Cme07g01369 . 1 383 TUB Transcription Factor Family AT1G53320 71.9 3.9e-155 544.7
Cme07g01658 . 20 414 TUB Transcription Factor Family AT1G53320 51.4 2.0e-103 372.9
Cme06g00687 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 63.8 2.8e-97 352.1
Cme06g01306 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 5.7e-82 301.2
Cme03g00617 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 8.2e-81 297.4
Cme03g00315 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 2.4e-80 295.8
Cme07g01658 . 119 414 TUB Transcription Factor Family AT3G06380 54.1 6.9e-80 294.3
Cme04g00548 . 120 411 TUB Transcription Factor Family AT3G06380 52.4 2.2e-78 289.3
Cme08g00854 . 118 414 TUB Transcription Factor Family AT3G06380 50.5 1.8e-75 279.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41821 PF01167 Tub 5.60E-102 CL0395 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00854 Cme_Chr08 FPKM 44.814064 42.114922 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0