Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00854 ATGTCATTCAAAAGCTTTTTTCGCGAGCTAAGGGAAATGAAAAATGGGATTAGAATCAGACCGAAGCGAGGGGGAGAAGGGAGGAATTGGCGAAGTCGTACAAGGGCACATATTGCACCTGATGAGGTGCCTCCTCAACCTGAAGTAATACAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGAGTTGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTTGTTCTTTTCTGTGCTTCAGTTTGCAAGTCATGGAGAAAAATTACACAGGAAATTGTTAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCGCTTAAACAGCCGGGACCTCGAGACTCTCCAATTCAATGCTATGTTAGAAGGCATAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAATAAGAAGGGCTACGGGTACAGATTTTGTTATATCTTTGGTAGCTGATGATTTTTCTTGGGCTTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCTCAAGATTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGAACGACAGAGCAATCAATCAAATCGAAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGCAACTACTCTATAGGGTCAGTCTCTTATGAGCTTAACATTCTACGAACTAGAGGACCACGAAGAATGCGCTGTGTCATGCAGTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCAACCTCATTCTCGTCCTGCCTCAATGACCATCATCACCACCCACCTTTACCGACTTCTAAAGGAAAGAAGTCAGACATAGATTTCAGTTCCACAAGTATCACTGAGCCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCCAGATGGCATGAACAGCTCCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAAAATTTCCAACTCGTGGCCGATGTCGATCCGGCCCTTGATGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGAAAAATTGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCGCTTTCCAAGCCTTTGCGATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1245 44.98 MSFKSFFRELREMKNGIRIRPKRGGEGRNWRSRTRAHIAPDEVPPQPEVIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRKITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRIRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGSRFTMYDSQPPVLTAERQSNQSNRRFHAKQVSPTMSACNYSIGSVSYELNILRTRGPRRMRCVMQSIPASCIQQGGNAPTPTSFSSCLNDHHHHPPLPTSKGKKSDIDFSSTSITEPPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5627200 5630655 - MELO3C007834.2.1 Cme08g00854 335117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00854 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Cme08g00854 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Cme08g00854 414 Pfam Tub family 116 409 IPR000007 -
Cme08g00854 414 PANTHER TUBBY-RELATED 1 414 - -
Cme08g00854 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Cme08g00854 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Cme08g00854 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Cme08g00854 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Cme08g00854 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Cme08g00854 414 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Cme08g00854 414 MobiDBLite consensus disorder prediction 278 310 - -
Cme08g00854 414 Gene3D - 49 102 - -
Cme08g00854 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01306 Cme-Chr6:10907911 Cme08g00854 Cme-Chr8:5627200 1.51E-148 dispersed
Cme08g00854 Cme-Chr8:5627200 Cme11g01977 Cme-Chr11:27746532 8.58E-61 dispersed
Cme04g00548 Cme-Chr4:4844554 Cme08g00854 Cme-Chr8:5627200 1.50E-179 wgd
Cme07g01658 Cme-Chr7:22249029 Cme08g00854 Cme-Chr8:5627200 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41821 PF01167 Tub 5.60E-102 CL0395 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00854 K19600 - csv:101221704 822.772