Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00860 ATGGATAATCTCTCACATTCTCGTCTCCCTAACAGGGGCTCTACCTCGCTTTCTAAGAAAATCTGTAATGGTAGTAATGGTGGTGGTCCTTTTGTTGCTCAAACTATCTACGACGACGTTTATGGCGGTCCTCCTAAGTTTGGAGTCTCTGCTTTGTCTCCTCGTTTTGAAGACTACGGTGAGATTTTCGGCAGCTTTCACGCGCTACGTGCTTCCTCGATTCCCATTCTCGATCTTCCTGCTGTTAATGAATCTGAGGTTTTCTTCGACGCTCGGAGCTCTGCATTTGACTACGCGGAGGTTTTTGGCGGGTTTGATGGTTTGGATTTTGCGATTTCTTATGATGAATTGGTTGGGCCTTCTAAAGGCGTTGATGATGGCTCTTCCGACGAAGCTTGGACTCCAGCAGGAACTGAATCCTTGTCAGACTGTTCGGATCATTCTGGAAATTCTCATTGTATGTCAAATGGAGACTCTAAACAGTCGTTTGAAGAGAGCACCGAGTTTTGCATATCGTATAACAAGGTTGACCGAGAAAGTAATGGAAATATATCAAATGGGAAGATACACGTTACCCAGTTGGAGATGCTTCCTGGATTCTCATATCTGGTTGATGAAGGAAATCCCTCGCCAAAGGCAACAGATGATGATCCGTCACTGCAGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGCAAACATCCAAGGAAAACTATGCCACCCCTAGTGGACAATAATGACTCTGGACCATTATTTGAGGATAACCCTATTTCTCAAAATGGATATGGTAGAGGTGTTTGTCGTTCTCGCGAGGATTTCATAACTGTATCTGAAATTAGCCTTAGAACTGAACCCTCGCAAGTGCCACCACCTGCTCGACCTCCTCCCAAGTTTGCTACCAAAAAGAGGGACTACGCTAGAAGGACTTTGAGTTGTGGGGAATCTGCTTCTGAATTAATTTCGGACAATGATACTCTTCCTTTATTTGATGTGGAGGTAGATGCTAGCTCATCTGCAGCGGCCTCTGCTGCAGCTATGAAAGAAGCAATGGAAAAAGCTCAAGCACAGTTACAAAATGCAAAAGATTTGTGGAAGAGGAAGAAGGAAGGGGTCCATGGAAGGATGAGACTGGACTCAAAAAATGATATGAGAGAAAAGGATGGGAAATCGTCGAAGATTCCAAATCGATTTAGGACTTTGGCCAATGAAAGTGGGCTGGGTGCTGGGGAAATTCATGGCCATGAGATGAGTTTGTCTGCCAGAGAGGAGAGGCAAAAGGATGTGAGGGCAACTGAAGTTTGTTCAGCACACTATGGAGGAGAGGAACTTTTAACAGATGCTGAAAAGACCCTACCAATTAGAAGTGGGGGTAAATTTTTTGTGTCCGAGAACCATGATTGCTGCAGCGAATGGAAAGACGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCCAGTAAGGAATTTGATTCGGTGAAAGATGATGCAATTTCTAACTTTGTGACTGCACAAATTGGAGTAGAGACCAACAATGCATGGGAGAACGATAAAGATCAAGACAAGAAAGCAAACACATTCCATACAGCTCACGTTCTGAATGAGGAAGTGAAGAATTTGGAGAATATGGTTCATGGAAAGGAGGAAGATAAGATCAAACTGAAGCCAAATATACACGAAACTAGGCAAAAAGAGCAGGTGAAATTAAAAATTCACCAAGGTGTTTGTGATCTTGAAGCAAATGATAGGAAATTTGGAGTTGCTCAAGGGTTTATGGAAATGAAAAAGCAAATGGGTTGTGCTAGCGATCTGGAGAAACGTGAAAAGCCTATGGAGTTTAGGCAATTGGACTGTGAGCTAAGGGTTGAGCAACCACCTGTTTCACCAAGGGATATTGAACAAGAAAAGAAAAAGGTTGTTGAAAGAAAGGAAAGTGGAAATAGTCTCAAGGAATCTCATATTATAGAAAACAATGCAAATAAAATGGAAGCCACTGTGAATGAGAAAAGAGGGATGTTCCCAGAGGCTTCTGAAAGGGAAAAGGTTGAGCAAAAAATGAGGATGTTCCTCGAGCAACCAGAAGATAAGAAAAGACTGAATTTGGTTCTTGAGGATGACAACTTTATGGGACAGATGGCTTGTGAAAGACAACTGGAAGGAGTTCATGAGATGGAAGATCATGGGGAAAAGGAAAAAGAGGCTGCCAAAGTTGGAGTCAGTGAGAGACCTGAGTTAGCTCATGTGATAGAAGATGACAACAAAAGGGCACAGGATTTTCAGTACAGAGAAGTATGTGAAAAAGGAGTCGATGATTCTTTCCAGGATTTGAACATTGAAGAGATGTCAAGAGATGTGGGTAGGTGTAAAGTGACTTCGATGCGGGTTAAAGATTCACAATCTAGTCCAGATCTCAACGGTACAAGTTTGGAGCATGATGGGTTAAAGAGATTGGATGATAGACACAAAGTAAATTCAACAATAGAATCTCAAGTGCATGATTTGGGAATATCTGCTGCTGCACTTCAAATGAAAGATGACAACGACCACTTACCCATTGAATTAGCATGTCCAAGAGGAATGTCTGAAGAATTCTCTATTGTAGATGAAAGTGGAGAGCGAAACACTACAGTTATAGTTAATGAAAATATTGAATTTAACAGAAATCCTTGTGTGCCAGGTGTGTGCCAGCCAGAGGTAGAACACCATAAAGTTCCAGTTGAAATGGAAGATGCAGATATACAACTATCTTTTGATGAATTGATTAAAAGAGCAGCCAAAGAAACGCAATTTCAATCCGAAATTGAACATACACAATCAGAACCAACTAACTCGGAAGACGGACTTTCATCTGAAAATTCAACAAGCATGGACGAGGGAGAGAACATAGACAAGATGGAAGATATGAAATCGTCACTTTCTCTGGATAGAAGTGATGAGAAGGCAGGCCAGGCAGATGTTTGCATTGAAGGGTTTGTAGGGACCAAGAAGTTTGTTACCGGAATGGGTTCTGTTCCTGAACATCCAGAAAGTAACTTGTTCTGTTGTATGGAAGATAAAGGGAAGTCCTCTGACAATGTTGAAGATAAGGGACAGAAAGTGCCAGTTCAGGGGGTCAATGCAAGGGCTGAGAAAGGAAGTGGATTGAAGTCAACGTGGCAAAATATTTCAGAAAGGACTCGGAAGAGTGGGGAATTCTCCTGTGAGGTCAATGCAAACCATGCCCCAGAAAGAAAGGAAAAGAATGTAAACCAGAACCATACATCTAAAGGAAAAGAGAGTGAGAGAGCAAGGAGTGAAGCAGAATGTGAGAATGACATTCTTCGAAAATTGGAAGAAGAGAGAGAAAGGGAGAGGGAGAGAGAGAAGGATAGAATGCCTATTGACAGGATTTCTCTTGAACCACGAGATAGAGTAGGTGCTGAAGCTCGTGAACGGGTAGAAAGGGCTGCTCTGGAGAGGATGACTGCCGAAGCCCGACAAAGAGCATTGGCTGACGCACGTGAAAGATTGGAAAAAGCATGTGCAGAGGCGAGAGAAAATTCATTGGCTGGGAAGGCAGCAGCTATGGAGGCAAGGGTAAAGGCAGAGCGTGCAGCTGTAGAGAGAGCAACTGCAGAGGCCAGGGAGCGAGCTGCAGAGAAAGCCAAGTTTGACAATACTTCTTTTGGGGCAAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTTCCAGAAATAATGAAATGAGACAGAAGACTTCATCCTCCGGTCAGCCTAGCCTACAATCTCAGAGCTTTGGCTCGGCCACTGCTTCAAGATATGCCTACTACTCGGCTTATGATGGTATGGGATCAGCAATCAATATATGCATACAGCGGTATGAGGGTGTTGATGGTGAATCACCTCAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCAAAAGCTCTGGCAGAAAAAAATATGCGTGATCTTCTGGCACAAAGAGAGCAAGCTGAGAGAAATAGATTAGCTGAGACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGGAACTTGCGTGCGTTGCTTTCTACATTGCAATATATCCTTGGACCTGATAGCGGTTGGCAGCCAATCCACTTAACGGAAGTTATAACTGCCGTTGCTGTAAAGAAAGCTTACAGGAAAGCGACTCTGTGTGTTCATCCAGACAAATTGCAACAACGGGGTGCAAGTATTCAGCAAAAGTATATATGCGAGAAGGTCTTTGATCTACTAAAGGAAGCTTGGAACAAATTCAACTCAGAAGAGCGGTAG 4335 42.98 MDNLSHSRLPNRGSTSLSKKICNGSNGGGPFVAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVNESEVFFDARSSAFDYAEVFGGFDGLDFAISYDELVGPSKGVDDGSSDEAWTPAGTESLSDCSDHSGNSHCMSNGDSKQSFEESTEFCISYNKVDRESNGNISNGKIHVTQLEMLPGFSYLVDEGNPSPKATDDDPSLQTNDDNYLNIDFDTGKVKGKHPRKTMPPLVDNNDSGPLFEDNPISQNGYGRGVCRSREDFITVSEISLRTEPSQVPPPARPPPKFATKKRDYARRTLSCGESASELISDNDTLPLFDVEVDASSSAAASAAAMKEAMEKAQAQLQNAKDLWKRKKEGVHGRMRLDSKNDMREKDGKSSKIPNRFRTLANESGLGAGEIHGHEMSLSAREERQKDVRATEVCSAHYGGEELLTDAEKTLPIRSGGKFFVSENHDCCSEWKDATEFFELARADISSKEFDSVKDDAISNFVTAQIGVETNNAWENDKDQDKKANTFHTAHVLNEEVKNLENMVHGKEEDKIKLKPNIHETRQKEQVKLKIHQGVCDLEANDRKFGVAQGFMEMKKQMGCASDLEKREKPMEFRQLDCELRVEQPPVSPRDIEQEKKKVVERKESGNSLKESHIIENNANKMEATVNEKRGMFPEASEREKVEQKMRMFLEQPEDKKRLNLVLEDDNFMGQMACERQLEGVHEMEDHGEKEKEAAKVGVSERPELAHVIEDDNKRAQDFQYREVCEKGVDDSFQDLNIEEMSRDVGRCKVTSMRVKDSQSSPDLNGTSLEHDGLKRLDDRHKVNSTIESQVHDLGISAAALQMKDDNDHLPIELACPRGMSEEFSIVDESGERNTTVIVNENIEFNRNPCVPGVCQPEVEHHKVPVEMEDADIQLSFDELIKRAAKETQFQSEIEHTQSEPTNSEDGLSSENSTSMDEGENIDKMEDMKSSLSLDRSDEKAGQADVCIEGFVGTKKFVTGMGSVPEHPESNLFCCMEDKGKSSDNVEDKGQKVPVQGVNARAEKGSGLKSTWQNISERTRKSGEFSCEVNANHAPERKEKNVNQNHTSKGKESERARSEAECENDILRKLEEEREREREREKDRMPIDRISLEPRDRVGAEARERVERAALERMTAEARQRALADARERLEKACAEARENSLAGKAAAMEARVKAERAAVERATAEARERAAEKAKFDNTSFGARERMERSVSDKFSASSRNNEMRQKTSSSGQPSLQSQSFGSATASRYAYYSAYDGMGSAINICIQRYEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILGPDSGWQPIHLTEVITAVAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 1444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5665035 5671063 + MELO3C007839.2.1 Cme08g00860 335123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00860 1444 Coils Coil 537 557 - -
Cme08g00860 1444 ProSiteProfiles dnaJ domain profile. 1380 1444 IPR001623 -
Cme08g00860 1444 Coils Coil 1309 1344 - -
Cme08g00860 1444 Coils Coil 1100 1127 - -
Cme08g00860 1444 Coils Coil 1163 1187 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 934 969 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 1 21 - -
Cme08g00860 1444 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 15 1439 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 1228 1267 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 123 160 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 799 820 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 133 160 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 289 312 - -
Cme08g00860 1444 PANTHER AUXILIN, ISOFORM A 15 1439 - -
Cme08g00860 1444 Gene3D DnaJ domain 1317 1444 IPR036869 -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 1078 1109 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 800 814 - -
Cme08g00860 1444 Coils Coil 1193 1213 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 202 264 - -
Cme08g00860 1444 SUPERFAMILY Chaperone J-domain 1303 1443 IPR036869 -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 938 963 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 1242 1267 - -
Cme08g00860 1444 Coils Coil 350 374 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 214 229 - -
Cme08g00860 1444 MobiDBLite consensus disorder prediction 374 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00860 - - - csv:101221934 2457.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00860 Cme-Chr8:5665035 Cme12g01155 Cme-Chr12:19679535 5.85E-32 dispersed
Cme03g00497 Cme-Chr3:7428101 Cme08g00860 Cme-Chr8:5665035 2.48E-58 transposed
Cme08g01840 Cme-Chr8:21918084 Cme08g00860 Cme-Chr8:5665035 1.84E-78 transposed
Cme04g00546 Cme-Chr4:4781551 Cme08g00860 Cme-Chr8:5665035 5.64E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00860 Cme_Chr08 FPKM 0.0 0.0 7.905806 6.886361 1.158463 1.31701 0.781701 0.0 0.130671 0.0