Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00864 ATGCCTTTAACAGCCTCTCGGATTATTACCCAAATGCCGCTTTCAGTCGCCGCCACTTTTCGCCCTTCTTTCAAAACTACCTCCAATAGAATTTTTAAGCTTCAATCCCTTAAACCCACATCGTCTCTTCATTTTCCTTCCTCGAATCTTGTTTTCCTTCGTGGGTTTGTCTCGAAGGAAGCTCTATTTCGGAACAGCGGCTGTGGCATGGCTGAATTGACTAGAACCTCTTCTTCTGTTAGATGTGGAAATGGAGATGAGGGGTTTAGAAGCTTAGAGACAGAGTCGTTCTTTGATGGGTCTTCTGAATTTCGTCCTGTGACTGCGGCTGGTGGGCTGGAGGCCATACTCAATAAGCTGAGCAAGTGGCTTGTAGCTGCCCTTTTTGCTGCTGTAATTCTTTTGAGGCATGATGCCGAAGCCTTGTGGACCGCCATGGGATCTGTTATTAATGCTGTACTTTCTATCGTCCTGAAAAGGATACTAAACCAAGAGCGGCCTATTGCCACACTGAGACCTGATCCTGGAATGCCCTCTTCTCATGCACAATCTATATTCTTCACTGTCGTATTTGTTGCCTTGTCAGCGGTGGAATGGCTAGGTGTTAATGCAGTATCATTGTCTATCTGTGGATTTTCCTTCATATTTGGTTCATACTTTTCATGGCTACGAGTCTCGCAGAAGCTTCACACTATCAGCCAAGTTTTGGTAGGTTCTGTATTAGGTGGTTTCTTCTCCATTTTATGGTATTTGCTGTGGAAGGCTGTGGTTAATGAAGCTTTTTCAGACAATTTGTGGGTTCAAGTTGTTGTGGTCTTGGGAGCTTCTGGATTCTGTATAGGCTTTGTTATATACGTCTTTAACAATTGGTTCAGGGATGAAAAATAG 888 43.92 MPLTASRIITQMPLSVAATFRPSFKTTSNRIFKLQSLKPTSSLHFPSSNLVFLRGFVSKEALFRNSGCGMAELTRTSSSVRCGNGDEGFRSLETESFFDGSSEFRPVTAAGGLEAILNKLSKWLVAALFAAVILLRHDAEALWTAMGSVINAVLSIVLKRILNQERPIATLRPDPGMPSSHAQSIFFTVVFVALSAVEWLGVNAVSLSICGFSFIFGSYFSWLRVSQKLHTISQVLVGSVLGGFFSILWYLLWKAVVNEAFSDNLWVQVVVVLGASGFCIGFVIYVFNNWFRDEK 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5686375 5689466 - MELO3C007843.2.1 Cme08g00864 335127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00864 295 Pfam PAP2 superfamily 166 253 IPR000326 -
Cme08g00864 295 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 124 254 IPR036938 -
Cme08g00864 295 PANTHER PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 70 294 - -
Cme08g00864 295 PANTHER LIPID PHOSPHATE PHOSPHATASE EPSILON 1, CHLOROPLASTIC 70 294 - -
Cme08g00864 295 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 170 268 - -
Cme08g00864 295 SMART acid_phosph_2 141 250 IPR000326 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00864 - - - csv:101223122 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00069 Cme-Chr5:466121 Cme08g00864 Cme-Chr8:5686375 4.05E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1006 Blo04g00909 . . . Bpe15g00421 Bpe13g00435 . . . . Cma03g00733 . Car03g00668 . Sed14g1139 . Cpe10g00626 Bhi03g01328 Tan03g2005 Cmetu08g1811 . Hepe04g1531 . . Cla01g01926 Cam01g2012 Cec04g1670 Cco04g1733 Clacu01g2033 Cmu01g1908 Cre04g1583 . . . Cone9ag1562 Lsi01g00662 . . Cme08g00864 . . Bda11g01855 . . . . Bma06g00114 . Cmo03g00762 . . . . . . . . . . . . . . . . . . . . . . Csa06g03260 Chy02g00629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006349 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00864 Cme_Chr08 FPKM 0.0 0.0 6.226962 6.893803 28.340717 27.565413 23.893156 0.0 0.0 0.0