Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00868 ATGGGTGATAGACTGATAAATAAATCTCATCCCCCTCCCAACAGAAGTCTAAAGAGAGATGGAGGAGTTGGAGACAAAAGCTATGCCAAAAACTCCTTAATTCAGCGAAAGGCAATGTCGAAAGCGTGGCCAATCATAAAGGAAGCCATTGAAGATTATTTGTGCACTGAAAATACTCCAATTACCACTTTAAGCATTGCAGATTTGGGATGTTCTTCCGGACCAAACACCCTTTCAATTCTCTCCGATTTAATCAAACAATTTCATAAAATAATTCAACTTCACCATAACAAACCAATCCAATACCAAATCTTCTTCAACGATCTTCCTTCAAATGATTTCAATTTCCTTTTTAGATCATTGTCAAAATTCTTGGAAGACCTGAAAAACCAAATTGGAACTGATTTTGGAACTTGTTTTTTTAATGGAGTCCCTGGTTCTTTTTATGGCAGACTCTTCCCCAACAAAAGTTTACATTTTGTTCATTCTTCATACACTCTTCACTGGCTCTCTAAGGTACCTGAAGGGATGGAGATGGTAAACAAAGGAAACATATTCATAAACAGGACAAGTCCAAAGAATGTGATTGAAGGGTATTATAAGCAATTTCAAAAGGATTTCTCACTGTTTTTGAAATGTCGTGGAGAAGAAATAGTAAGTGGTGGACGAATGGTTGTTACTATATTAGGAAGAACAGATGAATCTCCACCAAACGATGATTTTTGTTACACTTTGACCCTTTTGAATCTAGCTATCAATAACATGGTTAAGGAGGGGATGATCAGAGAAGAGAAAGTTGATAGATTCAATGTCCCAAACTTCATGCCAAGTTCAGAGGAAGTAAAAACAGAGGTTTTAAAAGAAGGAAGCTTCATTGTCAACCGTGTCGAAGTCGCACGAATTGATTGGAACTCGTATAATGATGAATTTAATCAATCAAATGTGTTTGTCGATAGCAGTTATTGTTATGCAAAATGCATTAGGTCTGTGTTTGAGCCCCTTATGATTCCTCACTTTGGAGAAGCCATTGTTGAAGAATTATTTCACAAGTTTGGAAAAATAGTTAAGGATGAAATGTCCAAAAAACAATGCGAGGAAACAAACATCACCATTTCCCTTACTAAGAAATAA 1131 36.16 MGDRLINKSHPPPNRSLKRDGGVGDKSYAKNSLIQRKAMSKAWPIIKEAIEDYLCTENTPITTLSIADLGCSSGPNTLSILSDLIKQFHKIIQLHHNKPIQYQIFFNDLPSNDFNFLFRSLSKFLEDLKNQIGTDFGTCFFNGVPGSFYGRLFPNKSLHFVHSSYTLHWLSKVPEGMEMVNKGNIFINRTSPKNVIEGYYKQFQKDFSLFLKCRGEEIVSGGRMVVTILGRTDESPPNDDFCYTLTLLNLAINNMVKEGMIREEKVDRFNVPNFMPSSEEVKTEVLKEGSFIVNRVEVARIDWNSYNDEFNQSNVFVDSSYCYAKCIRSVFEPLMIPHFGEAIVEELFHKFGKIVKDEMSKKQCEETNITISLTKK 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5701289 5703056 - MELO3C007846.2.1 Cme08g00868 335131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00868 376 MobiDBLite consensus disorder prediction 1 24 - -
Cme08g00868 376 Gene3D - 20 362 IPR042086 -
Cme08g00868 376 Gene3D Vaccinia Virus protein VP39 31 363 IPR029063 -
Cme08g00868 376 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 16 375 IPR005299 GO:0008168
Cme08g00868 376 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 17 376 IPR029063 -
Cme08g00868 376 Pfam SAM dependent carboxyl methyltransferase 49 375 IPR005299 GO:0008168
Cme08g00868 376 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 16 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00868 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101206718 598.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00868 Cme-Chr8:5701289 Cme08g00871 Cme-Chr8:5717275 0 dispersed
Cme08g00866 Cme-Chr8:5693138 Cme08g00868 Cme-Chr8:5701289 1.62E-66 proximal
Cme08g00867 Cme-Chr8:5694663 Cme08g00868 Cme-Chr8:5701289 4.06E-54 tandem
Cme08g00868 Cme-Chr8:5701289 Cme08g00869 Cme-Chr8:5705296 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1017 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g01931 Cam01g2016 Cec04g1674 Cco04g1738 Clacu01g2037 Cmu01g1912 Cre04g1589 . . . . . . . Cme08g00868 . . . . . . . . . Cmo03g00761 . . . . . . . . . . . . . . . . . . . . . . Csa06g03265 Chy02g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00868 Cme_Chr08 FPKM 0.303583 0.698117 0.418448 0.714112 2.195433 2.307994 2.11662 0.739259 0.745476 0.803825