Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00869 ATGGAGCTTTGTAAAATACTTCATATGAATTCTGGAGATGGAGACAAAAGCTATGCCAAAAACTCCTTACTTCAGCAAAAGGCAACGTCGAAAGTGTGGCCAATCATAAAGGAAGCCATTGAAGATTATTTGTGCACTGAAAATATCCCAATTACCACTTTAAGCATTGCAGATTTGGGATGTTCTTTCGGACCAAACACTCTTTCAATTCTCTCCGATTTAATCAAACAATTTCATAAAACAATTCTACTTCACCATAACAAACCAATCCAATACCAAATCTTCTTCAACGATCTTCCTTCCAACGATTTTGATTCCCTTTTTAGATCATTGTCAAATTTCTTGGAAGATTTGAAGAACCAAATTGGAACTGATTTTGGAACTTGTTTCTTCAATGGAGTTCCTGGTTCTTTTTATGGCAGACTCTTTCCCAACAAAAGTTTGCACTTTGTTCATTCTTCTTATGCCCTTCATTGGCTCTCTCAGGTACCTGAAGGGATGGAGATGATAAACAAAGGAAACATATTCATAGATAGGACAAGTCCAAAGAATGTGATTGAAGGGTATTATAAGCAATTTCAAAAAGATTTCTCATTGTTTTTGAAATGTCGTGGAGAAGAAATAGTAAGCGGTGGACGAATGGTTGTTACTCTAATAGGAAGAACAAATGAATCTCCACCAAAGGAAGATTTTTGTTACACTTTTACCCTTTTGAATTTAGCTATCTATAACATGGTTAAGGAGGGGATAATCAGAGAAGGGAAAGTTGATAGATTCAATATTCCAACCTTCATGCCAAGTCCAAAGGAAGTAAAAACAGAGGTTTTAAAAGAAGGGAGCTTCATCATAAATCGTGTTGAAGTCGCAGGAATTGATTGGAACGCGTATAATGATGAATTTGATGAATCAAATGTGCTCGTTGATAGTAGTTATTGTTACGCAAAATGTATTAGATCTGTGATTGAGCCCCTTATGATTACTCACTTTGGAGAAGCCGTTGTTGAAGAATTATTTCACAGGTTTAGAAAAATAGTTAAGGACGAAATGTCAAAAAAAAAGTGCGAGACTACACGCATTACTTTTTCCCTTACTAAGAAATAA 1101 35.42 MELCKILHMNSGDGDKSYAKNSLLQQKATSKVWPIIKEAIEDYLCTENIPITTLSIADLGCSFGPNTLSILSDLIKQFHKTILLHHNKPIQYQIFFNDLPSNDFDSLFRSLSNFLEDLKNQIGTDFGTCFFNGVPGSFYGRLFPNKSLHFVHSSYALHWLSQVPEGMEMINKGNIFIDRTSPKNVIEGYYKQFQKDFSLFLKCRGEEIVSGGRMVVTLIGRTNESPPKEDFCYTFTLLNLAIYNMVKEGIIREGKVDRFNIPTFMPSPKEVKTEVLKEGSFIINRVEVAGIDWNAYNDEFDESNVLVDSSYCYAKCIRSVIEPLMITHFGEAVVEELFHRFRKIVKDEMSKKKCETTRITFSLTKK 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5705296 5706983 - MELO3C007847.2.1 Cme08g00869 335132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00869 366 Gene3D - 6 352 IPR042086 -
Cme08g00869 366 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 365 - -
Cme08g00869 366 Gene3D Vaccinia Virus protein VP39 21 353 IPR029063 -
Cme08g00869 366 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 365 IPR005299 GO:0008168
Cme08g00869 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 366 IPR029063 -
Cme08g00869 366 Pfam SAM dependent carboxyl methyltransferase 39 365 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00869 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101206718 590.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00869 Cme-Chr8:5705296 Cme08g00871 Cme-Chr8:5717275 0 dispersed
Cme08g00868 Cme-Chr8:5701289 Cme08g00869 Cme-Chr8:5705296 0 tandem
Cme08g00869 Cme-Chr8:5705296 Cme08g00870 Cme-Chr8:5714138 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1019 . . . . . . . . . . Cma03g00730 . . . . . . . . . . . . . . . . . . . . . . . . Lsi01g00658 . . Cme08g00869 Blo05g00807 . . . . . . . . Cmo03g00758 Cmo07g00472 . . . . . . . . . . . . . . . . . . . . . . Chy02g00625 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00869 Cme_Chr08 FPKM 1.870992 1.500377 1.403833 1.454684 1.644425 1.759791 1.968722 2.468075 2.565467 2.263403