Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00871 ATGAGTGTTTACAAGCAAAAGGCAACATCCATAGCATGGCCAGTTATAAAGAAAGCCATTGAAGGGTTGTGCAGTGAAAACAATAATCCAATGACCACTTTAACCATTGCAGATTTGGGATGTTCTTCAGGACCAAACACTCTTACTATTGTCTCCAATTTAATCAAACAATTTCAGCTTCACAATAACAAACCAATCCAATATCAAATCTTCTTCAACGATCTACCTTCAAACGATTTCAATTCCATTTTTATATCCTTGCAAAATTTCTTGGAAGATTTGAAGAATCAAATTGGAGCAGATTTTGGAACTTGTTTCTTCAACGGAGTCCCAGGTTCTTTTTATGGTAGACTTTTTCCCAACAAAAGTTTACATTTTGTTCATTCTTGTTATAGCCTTCAATGGCTATCTCAGGTTCCAAGAGAGATGGAGATAATCAACAAAGGAAGCATATTCATAGACAATAAAAGTCCAAAGAATGTGATTGAAGGGTATTATAAGCAATTTCAAAAGGATTTTTCACTGTTTTTGAAGTGTCGTGAAGAAGAAGTAGTAAGTGGTGGACGAATGGTTGTTACATTAGTAGGAAGAACAGATGAATATCCATCGAATCAAGATTATTGTTACGCTTTTACACTTTTGAATTTAGCTCTCAATGGCATGGTTGCTGAGGGGATTGTGGAAGAGGAGAAAGTTGATAGATTCAATATCCCAAACTTCATGCCAAGTCCAAAGGAAATAAAAGATGAAGTTTTAAAAGAAGGAAGTTTCATCATCAATGAACTTAAAGTTTCAAGCATTGATTGGAATTTCTACAATACTGAATTGGAAGGAACAAAGCATACGTCGTTTGTAGGTAACAGTTACAATAATATTGCAAAATGCATTAGATCTGTGACTGAACCACTTATGATTCCTCACTTTGGAGAAGCTATCGTTGAAGAATTATTTTATAGATATAATAAAATAGTCAAAGATGAGATGTCCAAAAAAAGGATTGAGTTCACAAACCTCACTATTTCCCTTACTAGAATCTAA 1038 34.1 MSVYKQKATSIAWPVIKKAIEGLCSENNNPMTTLTIADLGCSSGPNTLTIVSNLIKQFQLHNNKPIQYQIFFNDLPSNDFNSIFISLQNFLEDLKNQIGADFGTCFFNGVPGSFYGRLFPNKSLHFVHSCYSLQWLSQVPREMEIINKGSIFIDNKSPKNVIEGYYKQFQKDFSLFLKCREEEVVSGGRMVVTLVGRTDEYPSNQDYCYAFTLLNLALNGMVAEGIVEEEKVDRFNIPNFMPSPKEIKDEVLKEGSFIINELKVSSIDWNFYNTELEGTKHTSFVGNSYNNIAKCIRSVTEPLMIPHFGEAIVEELFYRYNKIVKDEMSKKRIEFTNLTISLTRI 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5717275 5718823 - MELO3C007849.2.1 Cme08g00871 335134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00871 345 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 344 IPR029063 -
Cme08g00871 345 Pfam SAM dependent carboxyl methyltransferase 19 344 IPR005299 GO:0008168
Cme08g00871 345 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 330 IPR005299 GO:0008168
Cme08g00871 345 Gene3D Vaccinia Virus protein VP39 2 268 IPR029063 -
Cme08g00871 345 Gene3D - 138 331 IPR042086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00871 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101209890 613.224
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00866 Cme-Chr8:5693138 Cme08g00871 Cme-Chr8:5717275 5.80E-76 dispersed
Cme08g00868 Cme-Chr8:5701289 Cme08g00871 Cme-Chr8:5717275 0 dispersed
Cme08g00869 Cme-Chr8:5705296 Cme08g00871 Cme-Chr8:5717275 0 dispersed
Cme08g00871 Cme-Chr8:5717275 Cme08g00873 Cme-Chr8:5730090 3.11E-120 dispersed
Cme08g00870 Cme-Chr8:5714138 Cme08g00871 Cme-Chr8:5717275 3.15E-170 tandem
Cme08g00871 Cme-Chr8:5717275 Cme08g00872 Cme-Chr8:5723099 8.47E-132 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1021 . . . . . . . . . . Cma03g00729 Cma07g00473 . . . . . . . . . . . . . . . . . . . . . . . Lsi01g00657 . . Cme08g00871 . . . . . Bpe06g00040 . . . Cmo03g00756 Cmo07g00471 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00871 Cme_Chr08 FPKM 0.262733 0.279636 3.912689 5.313426 2.838959 3.102287 3.804531 0.0 0.0 0.0