Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00872 ATGGAGGAGGTGATCGAAATGTTACCAATGAATGGAGGTGTTGGAGACACAAGTTATGCTAACAACTCTTTCTTTCAGCAAAAGATTATGTCAATGAGTTGGCCAATGACAAAGGAAGCCATTACAAAACTCTATTGCACAAAATTTCCCAGAAAGTTGGCCATTGCTGACTTGGGATGTTCTTCGGGTCCAAATACTCTCACCATCGTCTCCAATTTGATCAAACAAGTAGAGACCACTCGTCACCAACTTCATAAAGGCTCTGTTGAATATCAAATATTCTTGAATGATCTTCATGCAAATGACTTCAATTCTATTTTTACTTCATTACCAAATTTCCACCAAAATTTGGATTCCCAAATGGCAAATATCGGTGGTGTTGGTCCATGTTTCTTTGTTGGTGTTCCTGGTTCTTTCTACGGCAGGCTTTTTCCTAGTGAAAGTTTGCATTTTGTTCATTCTTCTTATAGTCTTCATTGGCTGTCCCAGGTTCCTGAAGGGGTTGAAAGCAATAAAGGGAATATTTTCATATTTGATACAAGCCCAAAGGAAGTCCAAGAAGCCTATCACAACCAATTTCAAAAGGATTTTTCAACATTTTTGAAATGTCGAGCTGAGGAATTGGTGATCGGTGGTCGAATGGTTATAACAAGTTCAGCTAGAACATGTAAAGATCGATTGGATAAAGAATGTTGTTACGCTTGGCTGTTTTTGAATTTGGCTCTCCACGACTTGGTTGCACAGGGAATGGTTGAAAAGGAGAAGATTGACTCTTTTAATATTCCCATCTATATGCCATCTTTATCGGAGGTGGAAGATGAAGTGTTGAGAGAAGGAAGTTTCATCATTGAACATCTTCAAATCTCAAGAATTGATTGGAATCTCTCTAACACTAATCTCAACAATATCCCATCCAAAGACATACTTAACAGTGGTTATAATTTTGCAAAATGCATAAGATCCGTTGCTGAACCACTTCTTGTTCGTCACTTTGGACAACATATTATCGACAAATTATTCAACAAATATGCAGAAATTGTTGTTGATCATATGTCTAAATACAAAATTGAGAACATCAATTTCAACATTTCTCTCATCAAAATTAAATAA 1110 36.67 MEEVIEMLPMNGGVGDTSYANNSFFQQKIMSMSWPMTKEAITKLYCTKFPRKLAIADLGCSSGPNTLTIVSNLIKQVETTRHQLHKGSVEYQIFLNDLHANDFNSIFTSLPNFHQNLDSQMANIGGVGPCFFVGVPGSFYGRLFPSESLHFVHSSYSLHWLSQVPEGVESNKGNIFIFDTSPKEVQEAYHNQFQKDFSTFLKCRAEELVIGGRMVITSSARTCKDRLDKECCYAWLFLNLALHDLVAQGMVEKEKIDSFNIPIYMPSLSEVEDEVLREGSFIIEHLQISRIDWNLSNTNLNNIPSKDILNSGYNFAKCIRSVAEPLLVRHFGQHIIDKLFNKYAEIVVDHMSKYKIENINFNISLIKIK 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5723099 5724797 - MELO3C007850.2.1 Cme08g00872 335135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00872 369 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 6 367 - -
Cme08g00872 369 Gene3D Vaccinia Virus protein VP39 22 355 IPR029063 -
Cme08g00872 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 4 367 IPR029063 -
Cme08g00872 369 Pfam SAM dependent carboxyl methyltransferase 39 367 IPR005299 GO:0008168
Cme08g00872 369 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 367 IPR005299 GO:0008168
Cme08g00872 369 Gene3D - 8 354 IPR042086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00872 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - tcc:18610880 437.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02371 Cme-Chr6:30959888 Cme08g00872 Cme-Chr8:5723099 2.43E-106 dispersed
Cme08g00871 Cme-Chr8:5717275 Cme08g00872 Cme-Chr8:5723099 8.47E-132 tandem
Cme08g00872 Cme-Chr8:5723099 Cme08g00873 Cme-Chr8:5730090 1.50E-146 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1022 Blo04g00907 . Bda04g00039 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme08g00872 . . . . . . Bma03g00982 . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03268 Chy02g00623 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00872 Cme_Chr08 FPKM 3.323169 3.384566 4.458991 4.185834 6.811661 6.537389 6.975033 5.577758 5.410844 5.762726