Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00885 ATGTCCGGACCGGTGTTTTCCAAACCAGCTCTTGAAGGGTCTGATCTTGAGAATTCCGAGGATGAAAAGAATACACATATTGGATCCTTCAAGCAGAAGGCAGCTAATGCCTCCTCCAAGTTCAGACATTCTATGACAAGAAGGGGCAGGAGAAGTAGTAAAGTTTCATCTGAGATAATTGAAGACGTGCGCAACACAGAGGAGATGCAGTCTGTTGATGCCTTTCGCCAAGCATTAATATTAGAGGAGTTGCTGCCCGCCAAGCACGACGACTACCACATGATGCTCAGATTCTTGAAGGCCAGGAAGTTTGATATTGAGAAAACAAAGCAAATGTGGTCTGACATGCTCCAGTGGCGTAAAGAATTTGGCGCTGACACTATATTGGAAGACTTTGTATTTGAGGAGCTCGATCAAGTCTTGGATTATTATCCTCAAGGGCATCATGGTGTAGATAAGGAAGGACGACCAGTATATATTGAGAAGTTGGGAAAGGTGGATCCCGCAAAGTTAATGCAAGTCACCGATCTTGACCGCTATTTGAAATACCATGTACGGGAGTTTGAGAGGACATTCTTGGTAAAGTTTCCTGCCTGTTCAATAGCCTCCAAGAGACACATTGATCAAAGTACAACAATATTGGATGTCCAAGGAGTGGGACTTAAAAACTTCAATAAGACTGCTCGGGAACTCATTTCCCGGCTTCAGAAAGTTGATGGCGAGAACTATCCAGAGACCTTGAATCGTATGTTCATCATTAATGCCGGTTCCGGATTTAGAATGCTGTGGAACACTGTAAAATCTTTTCTAGATCCTAAAACCACTGCAAAGATCCATGTTCTTGGAAATAAATACCAAAGCAAGTTGCTGGAAATTATTGATTCAAGTGAATTGCCAGAGTTTCTCGGAGGCACCTGTACCTGCGCCGATCAAGGAGGATGCATGCGTTCTGATAAAGGTCCATGGAAGGACCAAAATATATTAAAGATGGTCAACAATGGAAACCATAAATGTTTAAGGGAATGTGGGGACAACGAGGGCCATCACTTACCTGATGTTAAGGATGTCTGCACCATCTCCCCCAAACATTCTTTTAATCACGTTGAACATCGATCACTCTCTCCTCTCCCTGAGGTTCCAATAACCAAGAATATTCAAGTGCCTTACAATGAGGATTGTGTCCCGGTGGTCGATAAAAGTGTGGATTTTGCATGGAAAACAGTGCCAGAAAAGAAAATGCTAGCCTCTTCCAAGGCAATAGATTATGCTTTAGCTGGTTCAGTAGAGGCCCCTGGGGGTCTTAAATCCAAGTTTGTCGCTAGTATTGTGGCTTTCCTAATGGGAATTTCTGCTACGGTGAGATTGGCTCGCACCATGCCTAAGAAGCTCACTAATGCCTCCATTTACTCCAAACCAGTTTACTGCGTTGACGACCCAATGTTCAAGGGTCAGAGTCAGGGCCAGCCTCCTTTATTACTACCCTTACCTGATTACATGTCCACCGTTAAGCGCATGGCTGAATTGGAAGAGAGAGTCAATAAGTTGTGCGTTAAACCTGTTGACATGCCTCGCGAGAAAGAGGAGCTACTGAAAGCTACAATAAGCCGCGTTGAAGCCCTTGAGCAGGAGCTTATCATATCCAAAAAGGTTTTGGAGGAAACACAGGCTAGACAAGCAGAGATCTTTGCTTATATTGAGAAAAAGAAGAAAAAGAGGAGACTGGTAATCTACTTTCACTAA 1740 43.68 MSGPVFSKPALEGSDLENSEDEKNTHIGSFKQKAANASSKFRHSMTRRGRRSSKVSSEIIEDVRNTEEMQSVDAFRQALILEELLPAKHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGADTILEDFVFEELDQVLDYYPQGHHGVDKEGRPVYIEKLGKVDPAKLMQVTDLDRYLKYHVREFERTFLVKFPACSIASKRHIDQSTTILDVQGVGLKNFNKTARELISRLQKVDGENYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDSSELPEFLGGTCTCADQGGCMRSDKGPWKDQNILKMVNNGNHKCLRECGDNEGHHLPDVKDVCTISPKHSFNHVEHRSLSPLPEVPITKNIQVPYNEDCVPVVDKSVDFAWKTVPEKKMLASSKAIDYALAGSVEAPGGLKSKFVASIVAFLMGISATVRLARTMPKKLTNASIYSKPVYCVDDPMFKGQSQGQPPLLLPLPDYMSTVKRMAELEERVNKLCVKPVDMPREKEELLKATISRVEALEQELIISKKVLEETQARQAEIFAYIEKKKKKRRLVIYFH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5807919 5813195 + MELO3C007863.2.1 Cme08g00885 335148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00885 579 Gene3D - 124 336 IPR036865 -
Cme08g00885 579 SMART CRAL_TRIO_N_2 91 116 IPR011074 -
Cme08g00885 579 Gene3D - 60 123 - -
Cme08g00885 579 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 15 574 - -
Cme08g00885 579 MobiDBLite consensus disorder prediction 1 57 - -
Cme08g00885 579 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 136 310 IPR001251 -
Cme08g00885 579 CDD SEC14 139 305 IPR001251 -
Cme08g00885 579 Coils Coil 537 557 - -
Cme08g00885 579 SUPERFAMILY CRAL/TRIO N-terminal domain 66 132 IPR036273 -
Cme08g00885 579 SUPERFAMILY CRAL/TRIO domain 135 332 IPR036865 -
Cme08g00885 579 Pfam CRAL/TRIO domain 143 304 IPR001251 -
Cme08g00885 579 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 15 574 - -
Cme08g00885 579 Pfam CRAL/TRIO, N-terminal domain 88 115 IPR011074 -
Cme08g00885 579 PRINTS Cellular retinaldehyde-binding protein signature 263 282 - -
Cme08g00885 579 PRINTS Cellular retinaldehyde-binding protein signature 296 305 - -
Cme08g00885 579 PRINTS Cellular retinaldehyde-binding protein signature 94 116 - -
Cme08g00885 579 MobiDBLite consensus disorder prediction 14 28 - -
Cme08g00885 579 SMART sec14_4 136 307 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00885 - - - csv:101208423 1089.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00844 Cme-Chr8:5564448 Cme08g00885 Cme-Chr8:5807919 1.26E-12 dispersed
Cme08g00885 Cme-Chr8:5807919 Cme11g00134 Cme-Chr11:1332044 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1029 . . . . . . . . . . Cma03g00721 Cma07g00466 Car03g00661 Car07g00413 . Cpe19g00824 Cpe10g00635 Bhi03g00922 . . . . . . Cla01g01939 Cam01g2027 Cec04g1687 Cco04g1751 Clacu01g2050 Cmu01g1926 Cre04g1600 . . . . Lsi01g00646 . . Cme08g00885 . . . . . . . . Sed01g0289 Cmo03g00748 Cmo07g00464 . Cma20g00834 . . . . Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa06g03279 Chy02g00615 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009311 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00885 Cme_Chr08 FPKM 0.917769 0.925289 14.673455 14.295383 2.668683 1.946412 3.298013 4.644501 4.409639 4.141726