Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00895 ATGGCAGCAGCTGCAGAAGCAATAACAGAGGGACGAGTCATCCATTGTACCACTATTGATTCATGGGAGCACCAAATTCAGAAGGGCAATGCCTCTCAACAATTGATAGTTGTGGATTTCACTGCATCATGGTGCGGTCCATGTCGGTTCGTTGCACCTTTCCTAGACGAGCTTGCTAAAAAATTTCCCAATGTCACATTTCTGAAGGTTGATGTAGATGAACTGGAGTCGGTGGCTAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTCCTGAAAGAGGGAAGAATTGTGGACAAAGTAGTTGGAGCTAAGAAGGAAGAACTGCAACAGACTGTATTGAAGCACTTGGCTACTGCTTCTGCCTGA 372 45.7 MAAAAEAITEGRVIHCTTIDSWEHQIQKGNASQQLIVVDFTASWCGPCRFVAPFLDELAKKFPNVTFLKVDVDELESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVLKHLATASA 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5876569 5878001 - MELO3C007873.2.1 Cme08g00895 335158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00895 123 SUPERFAMILY Thioredoxin-like 9 119 IPR036249 -
Cme08g00895 123 ProSiteProfiles Thioredoxin domain profile. 1 120 IPR013766 -
Cme08g00895 123 Pfam Thioredoxin 15 114 IPR013766 -
Cme08g00895 123 CDD TRX_family 31 114 - -
Cme08g00895 123 PRINTS Thioredoxin family signature 36 44 - -
Cme08g00895 123 PRINTS Thioredoxin family signature 44 53 - -
Cme08g00895 123 PRINTS Thioredoxin family signature 83 94 - -
Cme08g00895 123 PANTHER THIOREDOXIN 10 119 - -
Cme08g00895 123 PANTHER THIOREDOXIN 10 119 - -
Cme08g00895 123 Gene3D Glutaredoxin 2 122 - -
Cme08g00895 123 ProSitePatterns Thioredoxin family active site. 37 55 IPR017937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00895 K03671 trxA; thioredoxin 1 - csv:101203181 221.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01536 Cme-Chr3:24494623 Cme08g00895 Cme-Chr8:5876569 4.52E-12 dispersed
Cme04g01957 Cme-Chr4:27198952 Cme08g00895 Cme-Chr8:5876569 1.57E-34 dispersed
Cme08g00895 Cme-Chr8:5876569 Cme10g00993 Cme-Chr10:7863735 1.58E-45 dispersed
Cme01g00054 Cme-Chr1:426128 Cme08g00895 Cme-Chr8:5876569 4.12E-13 transposed
Cme02g00861 Cme-Chr2:11412792 Cme08g00895 Cme-Chr8:5876569 1.86E-16 transposed
Cme04g00809 Cme-Chr4:10076677 Cme08g00895 Cme-Chr8:5876569 1.29E-25 transposed
Cme04g01788 Cme-Chr4:25577201 Cme08g00895 Cme-Chr8:5876569 1.02E-10 transposed
Cme06g02123 Cme-Chr6:26891935 Cme08g00895 Cme-Chr8:5876569 1.58E-12 transposed
Cme08g00035 Cme-Chr8:287062 Cme08g00895 Cme-Chr8:5876569 7.29E-18 transposed
Cme08g01284 Cme-Chr8:9295462 Cme08g00895 Cme-Chr8:5876569 1.50E-13 transposed
Cme08g02093 Cme-Chr8:26522044 Cme08g00895 Cme-Chr8:5876569 9.54E-35 transposed
Cme09g00139 Cme-Chr9:1023544 Cme08g00895 Cme-Chr8:5876569 7.41E-28 transposed
Cme12g01446 Cme-Chr12:22223159 Cme08g00895 Cme-Chr8:5876569 1.40E-28 transposed
Cme03g01918 Cme-Chr3:27281405 Cme08g00895 Cme-Chr8:5876569 1.62E-33 wgd
Cme04g00516 Cme-Chr4:4248737 Cme08g00895 Cme-Chr8:5876569 7.33E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00895 Cme_Chr08 FPKM 0.871201 1.006352 0.236599 0.470143 1.2872 1.668082 1.151182 3.605199 3.45221 3.311279