Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme08g00899 | ATGTCTGGCTTTTTCACTTTAGGCGGTGGCGGCGGAGGAAGAGAAGAAGAACAAAATAACAACCGCCCCAACCAATTTATTCATCCCCCGCCGGATAGTAGTTTGTTTTGGTACAAAGCCGGCAACGTGGAGCTATGGCAGCAGCAGCAGCAACATCATCATCATCATCAAGAACAACCTCTCTTTCAAACACAATCTCGTACTACTACTACTACTACTCCCTACTCCGCACCACTAACCGTCCGGAACTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGTTCGGGATCGGGTGGAGGTGGAATCAGCTGCCAAGATTGTGGTAACCAAGCGAAGAAAGATTGTAGCCATATGAGATGTAGGACATGTTGCAAGAGCCGAGGATTTCATTGTGAAACCCATGTAAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGTGAACGCCAAGATAAACTTGCTGCCTTGCAAACCCATCATCATCATCAACAACAACAACTTCAACTCCATGGCGGCGACAATAATCCCAAACGCCATAGAGATTATAACTCCTCTTCACTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCTGAGTTGAACTCTCCAGCTGTGTTTCGTTGCGTTCGTGTTAGTTCTGCTGATGATACCGACGATCAATACGCGTATCAAACGGCAGTAAATATTGGTGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGGTGAGACCTCGTCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCACTGGAGCCGCTGATACCACCACCGGAAGCGGTGGTTCAACCGCGGCATTACCCTTGCTTGATCCTTCTTCCTTATATTCAACGCCGCTTAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA | 987 | 47.42 | MSGFFTLGGGGGGREEEQNNNRPNQFIHPPPDSSLFWYKAGNVELWQQQQQHHHHHQEQPLFQTQSRTTTTTTPYSAPLTVRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQTHHHHQQQQLQLHGGDNNPKRHRDYNSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSADDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPGETSSGGGGSSSGVQPLNFITGAADTTTGSGGSTAALPLLDPSSLYSTPLNSFMAGTQFFLPPRS | 328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5915372 | 5917769 | - | MELO3C007877.2.1 | Cme08g00899 | 335162 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme08g00899 | 328 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 324 | IPR007818 | GO:0003700|GO:0006355 | |
| Cme08g00899 | 328 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 107 | 149 | IPR006510 | - | |
| Cme08g00899 | 328 | MobiDBLite | consensus disorder prediction | 258 | 288 | - | - | |
| Cme08g00899 | 328 | MobiDBLite | consensus disorder prediction | 48 | 91 | - | - | |
| Cme08g00899 | 328 | MobiDBLite | consensus disorder prediction | 61 | 91 | - | - | |
| Cme08g00899 | 328 | PANTHER | PROTEIN SHORT INTERNODES | 1 | 324 | - | - | |
| Cme08g00899 | 328 | Pfam | Domain of unknown function (DUF702) | 105 | 257 | - | - | |
| Cme08g00899 | 328 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Cme08g00899 | 328 | MobiDBLite | consensus disorder prediction | 260 | 288 | - | - | |
| Cme08g00899 | 328 | MobiDBLite | consensus disorder prediction | 159 | 185 | - | - | |
| Cme08g00899 | 328 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 209 | 256 | IPR006511 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme02g00742 | Cme-Chr2:9283485 | Cme08g00899 | Cme-Chr8:5915372 | 1.24E-41 | transposed | |
| Cme05g00192 | Cme-Chr5:1367261 | Cme08g00899 | Cme-Chr8:5915372 | 1.20E-24 | transposed | |
| Cme05g00193 | Cme-Chr5:1368209 | Cme08g00899 | Cme-Chr8:5915372 | 4.27E-18 | transposed | |
| Cme03g01908 | Cme-Chr3:27196012 | Cme08g00899 | Cme-Chr8:5915372 | 2.14E-81 | wgd | |
| Cme04g00500 | Cme-Chr4:4044534 | Cme08g00899 | Cme-Chr8:5915372 | 7.34E-66 | wgd | |
| Cme07g01691 | Cme-Chr7:22460299 | Cme08g00899 | Cme-Chr8:5915372 | 1.80E-64 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41823 | PF05142 | DUF702 | 7.60E-68 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme08g00899 | - | - | csv:101207689 | 567.385 |