Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00900 ATGGCTCTTGGAAGGCCTCGTAGTAGCAAAAGAACATCCTCCTCTTCTTCCTATGCTTCAACCGTTACAACTGTCGTCTTCTTAGCCTTATGTGTTCTTGGAGTATGGATGCTCACCTCCAACTCTGTTGTTCCCCCGCAAACCACCACTCGCACTTCTTCTGACTCTTCAACTTCCTCCACCTCCACCGTTGCCACCACCACTGACTTTGTGTCTTCCTCTGAGGAACCCCAACTCCCCAAATCCGAGGATAAAGAGTCCACTCCTGCTTTTGAGGATAATCCTGGTGATCTCCCTCTTGATGCAATTAAATCCGATGATAGTTCTAATGTTGTTAGCGACGATGCAAAATCTCGTGAGGATCGTTCCAAGGATAATGCCAATGATGTGCAAGAACCTAGAGATAACAATGAGGCTCAATTGTCAGAAGAGAGTACAATGACTCAAAACCAACAAGTGGAAGCAACCCAAAAAATTGAGGAGAAATTAGATTTGGGAGGGAACCAAGAACAAAATATTAATTTACCTGATCAAAGCAATGAATCAACAGAACATGTGGAATCTGACAATAGTAAATCGAATGATACACCCAATGATACACCCAATGATACATCGTCAGAGACCAATGTGCAAGAACAACAAGAGCAGCAGCAGCAGCAGCAACAACAGGAAGAGCCTGAAAACAACGCTAATCCACAAGAAATCCAAGCAACAATTGCAAACATAGAGCAACAACAAGCAACCGATATCCCAGAAATAAGTGGAGACTCTCAAAACGATCAACCAAAACTTGAGACAGAAGGTGAAAAAATCACTCAAGAACCTGAAATTCATAACCAGGATGATGATAGGGCCCAACAACAGATACAACATCAACAAGAACAAGACACCTCAAACACAAATAACAACAATGAAGAAACTCCCTCATTGGAGCAAAATCAACCACGAAAGAGACACCGAGGTAAAAAAAAGTCAACTGAGGATCAAGAATTCCAACAAACAGAATCCAAGGAGAGCCAAGAAGCCCAAAAGGACTCGAAAACGGAAATCAAAGTGGAAGAAACAACTACAGCAGGGTCACTTGAGACCTCGGGGATACCCAAGGAGTCAAAGGAGTCCAAAAAGTCATGGTCAACACAGGCAGCGCAGTCGGAGAACGAGAAAGATCGTCGACGAGAAGAATCAAGCAGTGATGGCAGCATCTATGGGTACACATGGCAGATATGCAATGTCACAGCGGGACCTGATTACATTCCTTGTTTGGATAACGAGAAAGCAATTAAGCAACTGCGTACGACAAAACACTTCGAGCACCGAGAGAGACACTGCCCGGAGGAGGGACCTACCTGCCTGGTCTCTCTCCCGGAAGGTTACAAAAGATCCATTGAATGGCCTAAAAGTAGAGACAAGATTTGGTACCACAATGTACCACATACAAAACTTGCTGAAGTGAAAGGCCACCAAAATTGGGTCAAGGTCACCGGTGAGTTCTTGACTTTCCCCGGCGGTGGCACCCAGTTCATCCACGGCGCTCTGCACTACATAGATTTTCTTCAACAATCGGTACCGGATATTGCATGGGGAAAGAGAACAAGAGTGATATTGGACGTAGGCTGTGGAGTGGCCAGCTTCGGCGGCTTTCTGTTTGAAAAAGATGTGCTTACAATGTCGTTTGCTCCAAAAGACGAACATGAAGCTCAAGTCCAATTTGCCCTGGAGAGGGGAATTCCAGCCATTTCTGCTGTCATGGGCTCACAACGTCTGCCATTTCCAAGCATGGTTTTTGATACTATTCACTGTGCTCGATGTAGAGTGCCTTGGCATGTAGAAGGTGGAATGCTTCTTTTAGAATTGAATCGAGTGTTGAGACCAGGGGGCTTTTTTGTTTGGTCTGCAACTCCAGTGTACCAGACCCTAGAAGAAGACGTTGAGATTTGGAAAGAAATGTCTGCTTTGACGAAGTCTATGTGTTGGGAGCTTGTGACAATTCAAAAGGACAAGCTGAACTCTGTAGGCGCTGCCATTTACAGGAAACCAACCTCAAACGAATGCTACGATCAAAGAAAACACAAGCATCCCCCAATGTGCAAAAACGACGACGACCCAAATGCAGCATGGTATGTGCCACTGCAGGCATGCATGCATCGTGCGCCGGTTGACAACACTCTGAGAGGAAGCAGCTGGCCGGAGCAATGGCCTCGGAGGTTGCAAGCACCACCTTACTGGCTAAATAGCTCCCAGATGGGGGTTTATGGCAAACCGGCTCCTCAAGATTTCTCAACTGATTATGAACATTGGAAAAGAGTAGTGAATAAAACTTACATGAATGGATTAGGCATAAATTTGTCCAACATTAGGAATGTGATGGATATGAGATCTGTTTACGGCGGGTTTGCAGCAGCTCTGAGAGACCTTAAAGTCTGGGTAATGAATGTGGTGAATATTGACTCTCCCGATACACTTCCAGTGATCTACGAGCGTGGTCTCTTTGGGATTTACCATGATTGGTGTGAATCCTTCAGCACATATCCAAGAACATATGATCTACTACATGCTGATCATCTTTTCTCCAAATTGAAAAAGAGATGCAAACTGCAACCTGTCTTGGCAGAGGTCGACCGAATAGTAAGACCTGGAGGCAAATTGATCGTCCGAGATGAGTCCAGCACAATTGGAGAAGTGGAGAACTTGTTGAAGTCTCTCCGTTGGGAAGTTCACTTGACCTTCTCCAAAAACCAGGAAGGGCTGCTGAGTGCTCAGAAAGGAGCTGAGAGAGCTCACCATCAGAACCACCAATGTGCTTGCCATTCACAAAAATTTGAGGAACAGTCCGCTTTCCAGTCAGGTCTAGTAGAACACTCTGAATTTGAGGTCCATCATCTGAGTAAATGTAGATACCCATTATGTGGTCATGAAAAAGCTTCTTCAAACAATTATTAA 2940 44.97 MALGRPRSSKRTSSSSSYASTVTTVVFLALCVLGVWMLTSNSVVPPQTTTRTSSDSSTSSTSTVATTTDFVSSSEEPQLPKSEDKESTPAFEDNPGDLPLDAIKSDDSSNVVSDDAKSREDRSKDNANDVQEPRDNNEAQLSEESTMTQNQQVEATQKIEEKLDLGGNQEQNINLPDQSNESTEHVESDNSKSNDTPNDTPNDTSSETNVQEQQEQQQQQQQQEEPENNANPQEIQATIANIEQQQATDIPEISGDSQNDQPKLETEGEKITQEPEIHNQDDDRAQQQIQHQQEQDTSNTNNNNEETPSLEQNQPRKRHRGKKKSTEDQEFQQTESKESQEAQKDSKTEIKVEETTTAGSLETSGIPKESKESKKSWSTQAAQSENEKDRRREESSSDGSIYGYTWQICNVTAGPDYIPCLDNEKAIKQLRTTKHFEHRERHCPEEGPTCLVSLPEGYKRSIEWPKSRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQQSVPDIAWGKRTRVILDVGCGVASFGGFLFEKDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLPFPSMVFDTIHCARCRVPWHVEGGMLLLELNRVLRPGGFFVWSATPVYQTLEEDVEIWKEMSALTKSMCWELVTIQKDKLNSVGAAIYRKPTSNECYDQRKHKHPPMCKNDDDPNAAWYVPLQACMHRAPVDNTLRGSSWPEQWPRRLQAPPYWLNSSQMGVYGKPAPQDFSTDYEHWKRVVNKTYMNGLGINLSNIRNVMDMRSVYGGFAAALRDLKVWVMNVVNIDSPDTLPVIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCKLQPVLAEVDRIVRPGGKLIVRDESSTIGEVENLLKSLRWEVHLTFSKNQEGLLSAQKGAERAHHQNHQCACHSQKFEEQSAFQSGLVEHSEFEVHHLSKCRYPLCGHEKASSNNY 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5929300 5934223 + MELO3C007878.2.1 Cme08g00900 335163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00900 979 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 8 299 IPR004159 GO:0008168
Cme08g00900 979 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 311 927 IPR004159 GO:0008168
Cme08g00900 979 MobiDBLite consensus disorder prediction 108 139 - -
Cme08g00900 979 PANTHER METHYLTRANSFERASE PMT27-RELATED 8 299 - -
Cme08g00900 979 PANTHER METHYLTRANSFERASE PMT27-RELATED 311 927 - -
Cme08g00900 979 MobiDBLite consensus disorder prediction 140 156 - -
Cme08g00900 979 MobiDBLite consensus disorder prediction 43 398 - -
Cme08g00900 979 Gene3D Vaccinia Virus protein VP39 516 690 IPR029063 -
Cme08g00900 979 MobiDBLite consensus disorder prediction 323 352 - -
Cme08g00900 979 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 416 920 IPR004159 GO:0008168
Cme08g00900 979 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 739 904 IPR029063 -
Cme08g00900 979 MobiDBLite consensus disorder prediction 167 181 - -
Cme08g00900 979 MobiDBLite consensus disorder prediction 43 77 - -
Cme08g00900 979 MobiDBLite consensus disorder prediction 290 310 - -
Cme08g00900 979 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 439 685 IPR029063 -
Cme08g00900 979 MobiDBLite consensus disorder prediction 193 261 - -
Cme08g00900 979 MobiDBLite consensus disorder prediction 262 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00900 - - - cmo:103485101 1729.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00572 Cme-Chr4:5204455 Cme08g00900 Cme-Chr8:5929300 1.08E-178 dispersed
Cme08g00900 Cme-Chr8:5929300 Cme08g01136 Cme-Chr8:7991435 7.10E-16 dispersed
Cme08g00900 Cme-Chr8:5929300 Cme06g00208 Cme-Chr6:1266372 3.46E-136 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1064 . . Bda04g00033 Bda10g00167 Bpe15g00369 . Bma09g00097 Bma15g00971 . . Cma03g00706 Cma07g00451 Car03g00647 Car07g00398 Sed14g1170 Cpe19g00838 Cpe10g00647 Bhi03g00898 Tan03g2044 Cmetu04g1166 . Hepe04g1565 . . Cla01g01953 Cam01g2042 Cec04g1700 Cco04g1765 Clacu01g2064 Cmu01g1941 Cre04g1615 . . Cone6ag1660 . Lsi01g00630 . . Cme08g00900 Blo05g00816 Blo06g00330 . . Bpe10g00139 Bpe06g00031 . . . Cmo03g00732 Cmo07g00448 . . . . . . . . . . . . . . . . . . . . . Csa06g03295 Chy02g00601 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000953 3 2 4 3 4 2 4 2 2 3 2 2 4 2 2 4 2 6 4 2 3 2 2 2 2 2 2 5 3 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00900 Cme_Chr08 FPKM 2.192308 1.462172 0.890439 0.958684 2.868693 2.903098 3.461992 0.690419 0.443344 0.621214