Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g00904 | ATGGACATGGATTCTGCTTTCAACATGCATCTCATCAAAGACTTCACTTTCAAATCCACCCCCAAACTTCACTTCGATGATTTTTGGTCCTCCAATCTTCAAAACGCTTCATCCCCATCTTCCGACCACATTTTTGTAGATCAATTCCTCAACTTTTCAGATGAAGAACAGCAAGAAGATGGAGAAAAAAACAACCATTCCTCTCTTTCTCCTCCCCTGCAACTTCAACAACATCACGACACCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTCTGGTCTATTTCTTCAACAGATTTTGAAGACCTTGCCTGGCTCTCTCAGCTCGTTGCCGATTCCACCCAAGAAGAATACTCTGCTCCACCACCGCCTCCCTCTGTTTTCTCGACACACAAACCTAGAAATCCCCTTCCAAAAATTCAATCTTATCTCAATACCCCATTTCCTTCAAAACCCAGAACCAAGCGACCAAAAATCTCCGCCGGAGTCTGGTCTTTAACCCCGCTGCCGGCGAAGAAATCAAAGAAGAATCCTGCAGATGAGGGCTCCGGGAGGGTCCAGGCGGGGCGCCGGTGCAGTCATTGTGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGGCCACTTGGAGCAAAGAGTCTATGTAATGCATGCGGTGTCCGGTTCAAATCCGGGCGGCTCTTTCCCGAATACAGACCGGCTTGTAGCCCGACGTTTTCGAACGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAAGGGAGAAACCCCACTCCGGTGTGGAGTTAGTGTAA | 825 | 48.97 | MDMDSAFNMHLIKDFTFKSTPKLHFDDFWSSNLQNASSPSSDHIFVDQFLNFSDEEQQEDGEKNNHSSLSPPLQLQQHHDTDQNSNHSSTNSSEDDFWSISSTDFEDLAWLSQLVADSTQEEYSAPPPPPSVFSTHKPRNPLPKIQSYLNTPFPSKPRTKRPKISAGVWSLTPLPAKKSKKNPADEGSGRVQAGRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSNELHSNHHRKVLEMRRKKEREKPHSGVELV | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5943951 | 5944790 | + | MELO3C007882.2.1 | Cme08g00904 | 335167 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g00904 | 274 | ProSiteProfiles | GATA-type zinc finger domain profile. | 191 | 227 | IPR000679 | GO:0006355|GO:0043565 | |
Cme08g00904 | 274 | MobiDBLite | consensus disorder prediction | 64 | 95 | - | - | |
Cme08g00904 | 274 | PIRSF | Txn_fac_GATA_plant | 25 | 273 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Cme08g00904 | 274 | MobiDBLite | consensus disorder prediction | 119 | 194 | - | - | |
Cme08g00904 | 274 | ProSitePatterns | GATA-type zinc finger domain. | 197 | 222 | IPR000679 | GO:0006355|GO:0043565 | |
Cme08g00904 | 274 | MobiDBLite | consensus disorder prediction | 56 | 95 | - | - | |
Cme08g00904 | 274 | Gene3D | - | 188 | 268 | IPR013088 | GO:0006355|GO:0008270 | |
Cme08g00904 | 274 | MobiDBLite | consensus disorder prediction | 140 | 154 | - | - | |
Cme08g00904 | 274 | CDD | ZnF_GATA | 196 | 245 | IPR000679 | GO:0006355|GO:0043565 | |
Cme08g00904 | 274 | Pfam | GATA zinc finger | 197 | 230 | IPR000679 | GO:0006355|GO:0043565 | |
Cme08g00904 | 274 | PANTHER | GATA TRANSCRIPTION FACTOR | 31 | 172 | - | - | |
Cme08g00904 | 274 | PANTHER | GATA TRANSCRIPTION FACTOR | 175 | 266 | - | - | |
Cme08g00904 | 274 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 194 | 254 | - | - | |
Cme08g00904 | 274 | SMART | GATA_3 | 191 | 245 | IPR000679 | GO:0006355|GO:0043565 | |
Cme08g00904 | 274 | PANTHER | GATA TRANSCRIPTION FACTOR | 175 | 266 | - | - | |
Cme08g00904 | 274 | PANTHER | GATA TRANSCRIPTION FACTOR | 31 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00904 | Cme-Chr8:5943951 | Cme11g00170 | Cme-Chr11:1826644 | 1.26E-41 | dispersed | |
Cme08g00904 | Cme-Chr8:5943951 | Cme07g01697 | Cme-Chr7:22530241 | 2.70E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41824 | PF00320 | GATA | 1.10E-16 | CL0167 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g00904 | - | K21630 | csv:105435937 | 481.485 |