Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00904 ATGGACATGGATTCTGCTTTCAACATGCATCTCATCAAAGACTTCACTTTCAAATCCACCCCCAAACTTCACTTCGATGATTTTTGGTCCTCCAATCTTCAAAACGCTTCATCCCCATCTTCCGACCACATTTTTGTAGATCAATTCCTCAACTTTTCAGATGAAGAACAGCAAGAAGATGGAGAAAAAAACAACCATTCCTCTCTTTCTCCTCCCCTGCAACTTCAACAACATCACGACACCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTCTGGTCTATTTCTTCAACAGATTTTGAAGACCTTGCCTGGCTCTCTCAGCTCGTTGCCGATTCCACCCAAGAAGAATACTCTGCTCCACCACCGCCTCCCTCTGTTTTCTCGACACACAAACCTAGAAATCCCCTTCCAAAAATTCAATCTTATCTCAATACCCCATTTCCTTCAAAACCCAGAACCAAGCGACCAAAAATCTCCGCCGGAGTCTGGTCTTTAACCCCGCTGCCGGCGAAGAAATCAAAGAAGAATCCTGCAGATGAGGGCTCCGGGAGGGTCCAGGCGGGGCGCCGGTGCAGTCATTGTGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGGCCACTTGGAGCAAAGAGTCTATGTAATGCATGCGGTGTCCGGTTCAAATCCGGGCGGCTCTTTCCCGAATACAGACCGGCTTGTAGCCCGACGTTTTCGAACGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAAGGGAGAAACCCCACTCCGGTGTGGAGTTAGTGTAA 825 48.97 MDMDSAFNMHLIKDFTFKSTPKLHFDDFWSSNLQNASSPSSDHIFVDQFLNFSDEEQQEDGEKNNHSSLSPPLQLQQHHDTDQNSNHSSTNSSEDDFWSISSTDFEDLAWLSQLVADSTQEEYSAPPPPPSVFSTHKPRNPLPKIQSYLNTPFPSKPRTKRPKISAGVWSLTPLPAKKSKKNPADEGSGRVQAGRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSNELHSNHHRKVLEMRRKKEREKPHSGVELV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5943951 5944790 + MELO3C007882.2.1 Cme08g00904 335167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00904 274 ProSiteProfiles GATA-type zinc finger domain profile. 191 227 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 MobiDBLite consensus disorder prediction 64 95 - -
Cme08g00904 274 PIRSF Txn_fac_GATA_plant 25 273 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cme08g00904 274 MobiDBLite consensus disorder prediction 119 194 - -
Cme08g00904 274 ProSitePatterns GATA-type zinc finger domain. 197 222 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 MobiDBLite consensus disorder prediction 56 95 - -
Cme08g00904 274 Gene3D - 188 268 IPR013088 GO:0006355|GO:0008270
Cme08g00904 274 MobiDBLite consensus disorder prediction 140 154 - -
Cme08g00904 274 CDD ZnF_GATA 196 245 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 Pfam GATA zinc finger 197 230 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 PANTHER GATA TRANSCRIPTION FACTOR 31 172 - -
Cme08g00904 274 PANTHER GATA TRANSCRIPTION FACTOR 175 266 - -
Cme08g00904 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 254 - -
Cme08g00904 274 SMART GATA_3 191 245 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 PANTHER GATA TRANSCRIPTION FACTOR 175 266 - -
Cme08g00904 274 PANTHER GATA TRANSCRIPTION FACTOR 31 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00904 - - K21630 csv:105435937 481.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00904 Cme-Chr8:5943951 Cme11g00170 Cme-Chr11:1826644 1.26E-41 dispersed
Cme08g00904 Cme-Chr8:5943951 Cme07g01697 Cme-Chr7:22530241 2.70E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01757 CCT,ECH 92 365 C2C2-Gata Transcription Factor Family AT5G25830 52.3 3.4e-70 262.3
Cme07g01697 . 83 365 C2C2-Gata Transcription Factor Family AT5G66320 52.2 7.4e-65 244.6
Cme08g00904 . 104 262 C2C2-Gata Transcription Factor Family AT4G36240 52.3 5.8e-40 161.4
Cme03g01757 CCT,ECH 116 365 C2C2-Gata Transcription Factor Family AT4G32890 52.6 6.5e-60 228.0
Cme04g00035 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 3.0e-134 475.7
Cme06g02531 . 40 541 C2C2-Gata Transcription Factor Family AT4G17570 53.0 8.4e-129 457.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41824 PF00320 GATA 1.10E-16 CL0167 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00904 Cme_Chr08 FPKM 4.725333 8.055003 6.961249 7.961179 6.668279 0.0 7.684098 11.20168 12.698139 13.908349