Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00904 ATGGACATGGATTCTGCTTTCAACATGCATCTCATCAAAGACTTCACTTTCAAATCCACCCCCAAACTTCACTTCGATGATTTTTGGTCCTCCAATCTTCAAAACGCTTCATCCCCATCTTCCGACCACATTTTTGTAGATCAATTCCTCAACTTTTCAGATGAAGAACAGCAAGAAGATGGAGAAAAAAACAACCATTCCTCTCTTTCTCCTCCCCTGCAACTTCAACAACATCACGACACCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTCTGGTCTATTTCTTCAACAGATTTTGAAGACCTTGCCTGGCTCTCTCAGCTCGTTGCCGATTCCACCCAAGAAGAATACTCTGCTCCACCACCGCCTCCCTCTGTTTTCTCGACACACAAACCTAGAAATCCCCTTCCAAAAATTCAATCTTATCTCAATACCCCATTTCCTTCAAAACCCAGAACCAAGCGACCAAAAATCTCCGCCGGAGTCTGGTCTTTAACCCCGCTGCCGGCGAAGAAATCAAAGAAGAATCCTGCAGATGAGGGCTCCGGGAGGGTCCAGGCGGGGCGCCGGTGCAGTCATTGTGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGGCCACTTGGAGCAAAGAGTCTATGTAATGCATGCGGTGTCCGGTTCAAATCCGGGCGGCTCTTTCCCGAATACAGACCGGCTTGTAGCCCGACGTTTTCGAACGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAAGGGAGAAACCCCACTCCGGTGTGGAGTTAGTGTAA 825 48.97 MDMDSAFNMHLIKDFTFKSTPKLHFDDFWSSNLQNASSPSSDHIFVDQFLNFSDEEQQEDGEKNNHSSLSPPLQLQQHHDTDQNSNHSSTNSSEDDFWSISSTDFEDLAWLSQLVADSTQEEYSAPPPPPSVFSTHKPRNPLPKIQSYLNTPFPSKPRTKRPKISAGVWSLTPLPAKKSKKNPADEGSGRVQAGRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSNELHSNHHRKVLEMRRKKEREKPHSGVELV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5943951 5944790 + MELO3C007882.2.1 Cme08g00904 335167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00904 274 ProSiteProfiles GATA-type zinc finger domain profile. 191 227 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 MobiDBLite consensus disorder prediction 64 95 - -
Cme08g00904 274 PIRSF Txn_fac_GATA_plant 25 273 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cme08g00904 274 MobiDBLite consensus disorder prediction 119 194 - -
Cme08g00904 274 ProSitePatterns GATA-type zinc finger domain. 197 222 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 MobiDBLite consensus disorder prediction 56 95 - -
Cme08g00904 274 Gene3D - 188 268 IPR013088 GO:0006355|GO:0008270
Cme08g00904 274 MobiDBLite consensus disorder prediction 140 154 - -
Cme08g00904 274 CDD ZnF_GATA 196 245 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 Pfam GATA zinc finger 197 230 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 PANTHER GATA TRANSCRIPTION FACTOR 31 172 - -
Cme08g00904 274 PANTHER GATA TRANSCRIPTION FACTOR 175 266 - -
Cme08g00904 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 254 - -
Cme08g00904 274 SMART GATA_3 191 245 IPR000679 GO:0006355|GO:0043565
Cme08g00904 274 PANTHER GATA TRANSCRIPTION FACTOR 175 266 - -
Cme08g00904 274 PANTHER GATA TRANSCRIPTION FACTOR 31 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00904 Cme-Chr8:5943951 Cme11g00170 Cme-Chr11:1826644 1.26E-41 dispersed
Cme08g00904 Cme-Chr8:5943951 Cme07g01697 Cme-Chr7:22530241 2.70E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41824 PF00320 GATA 1.10E-16 CL0167 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00904 - K21630 csv:105435937 481.485