Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00909 ATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCTACTTTGTTTTGTGCTGCTGATGAGGCTGCTCTTTGTGCAGTTTGTGATACAAAGGTACACATGTGCAATAAGCTTGCGAGCCGTCATGTAAGAGTTGGGCTTGCAAATCCAAGTGAAGTTCCTCGCTGTGATATTTGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATCGTTCATGTTGGTGGTAAAAGAATGCACAAGAGATATCTCCGTCTAAGGCAGAGAGTTGAGTTTCCAGGCGATAAACGAAATGATGGGAAGGACCAAAATGTAAAACCGATGGAACAGGTTGAGAAAGTAAAAGGCCAAAATGAAGAAAGGGGTGAGATTGAAAAGCATGAAGAGTTGAGGGTCTCAGGTGTTGAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGGCCTAATAAAGTGATTGATTTAAACATGTAG 507 41.42 MRILCDSCESAAATLFCAADEAALCAVCDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKRNDGKDQNVKPMEQVEKVKGQNEERGEIEKHEELRVSGVEKDYSNGDGHSKRPNKVIDLNM 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5976207 5977952 - MELO3C007886.2.1 Cme08g00909 335172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00909 168 CDD Bbox1_BBX-like 4 47 - -
Cme08g00909 168 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cme08g00909 168 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Cme08g00909 168 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Cme08g00909 168 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 168 - -
Cme08g00909 168 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 168 - -
Cme08g00909 168 MobiDBLite consensus disorder prediction 105 161 - -
Cme08g00909 168 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Cme08g00909 168 SMART bboxneu5 51 96 IPR000315 GO:0008270
Cme08g00909 168 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme08g00909 168 MobiDBLite consensus disorder prediction 105 168 - -
Cme08g00909 168 Gene3D Classic Zinc Finger 1 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00909 Cme-Chr8:5976207 Cme11g02456 Cme-Chr11:31278052 3.17E-24 dispersed
Cme07g01646 Cme-Chr7:22180960 Cme08g00909 Cme-Chr8:5976207 8.01E-30 transposed
Cme03g01907 Cme-Chr3:27183411 Cme08g00909 Cme-Chr8:5976207 4.65E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41826 PF00643 zf-B_box 2.70E-06 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00909 - - csv:101206016 332.798