Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00910 ATGTCCTTTAAACTTAATCTACATGACCCTCTTGGTGCATTGACTGCTTGGGATTCTTCCACCCCATTAGCGCCATGTGACTGGCGGGGTGTTGTTTGTACTAATAATCGAGTCACTGAGCTCCGTTTGCCTCGTCTTCAACTCTCCGGCAGGTTGACCGATCAGTTGGCCAATTTACGGATGCTGCGGAAGTTCAGTATCCGGTCTAATTTCTTCAATGGTACGATTCCGTCTTCTTTGTCCAAATGTGCGTTGCTGCGTTCTGTTTTCTTGCAGTATAATTTGTTTTCCGGTGGCTTTCCCGCGGAGTTTGGGAACTTGACTAATCTACATGTATTAAACGTGGCGGAGAATCGTCTCTCCGGTGTGATCTCCGGCGACCTTCCGAGTAGTCTGAAATATCTCGATCTTTCGTCGAATGCCTTCTCTGGTCAGATTCCGAGGAGTATTGTGAACATGACGCAGCTTCAGGTTGTTAATCTCTCTTTCAATAGGTTTGGCGGGGAGATTCCGGCGAGCTTTGGTGAGCTTCAAGAGCTTCAACATCTCTGGCTTGACCATAATGTATTAGAAGGGACGTTGCCTTCGGCTCTCGCAAATTGTTCTTCGCTTGTTCATTTGAGTGTTGAGGGAAATGCTCTCCAAGGGGTGATTCCGGCCGCCATTGGAGCTCTTACGAACCTTCAAGTTATTTCTCTCTCGCAGAATGGTCTCTCTGGTTCAGTTCCTTACTCCATGTTTTGCAATGTTTCGTCGCATGCGCCGTCGCTTCGGATCGTTCAACTTGGATTTAATGCGTTCACGGACATTGTCAAACCTCAGACAGCGACGTGTTTTAGTGCTTTACAGGTCCTCGATATTCAACATAATCAGATAAGGGGAGAGTTCCCCTTGTGGTTAACCGGGGTTTCCACTTTGTCAGTCTTGGACTTTTCTGTCAATCATTTCTCCGGCCAGATTCCATCAGGGATTGGGAATCTTTCTGGATTACAAGAGCTCAGAATGTCGAATAATTCGTTTCACGGCGAGATTCCTTTAGAAATCAAGAATTGCGCCTCGATTTCTGTTATTGATTTTGAAGGGAATCGCTTAACCGGGGAGATTCCGTCGTTTTTGGGCTATATGAGAGGTTTGAAACGGTTGTCTCTCGGCGGAAATCGTTTTTCCGGTACTGTTCCGGCCAGTTTGGGAAACCTTTTGGAGCTTGAAATCTTGAATTTGGAGGACAATGGGTTGAACGGAACCCTTCCGCTGGAGCTAATGGGGCTTGGGAATTTAACAGTAATGGAACTCGGTGGGAACAAATTGTCCGGCGAGGTTCCGACTGGCATTGGCAACCTCAGTCGTCTAGAGATTTTGAATCTCAGTGCTAACAGTCTTTCTGGGATCATTCCGTCCAGCCTTGGCAATCTCTTCAAGCTAACAACTCTCGACTTGAGTAAACAAAATCTTTCTGGGGAGTTGCCATTTGAGCTATCTGGTTTGCCTAATCTGCAGGTAATTGCTCTACAGGAAAACAAATTATCTGGGAATGTTCCTGAAGGATTCAGTAGTTTGGTGGGTTTGCGTTATTTGAATCTAAGTTCAAACGGATTTTCCGGTCAAATCCCTTCAAATTATGGGTTTCTTCGATCGCTTGTTTCTCTGTCATTATCAGACAATCACATTACCGGGTTGGTTCCTTCAGACCTTGGTAACTGCTCTGATTTAGAAACTTTGGAGGTCCGTTCAAATGCTCTTTCGGGTCACATTCCGGCGGATCTTTCTCGTTTATCTAATTTGCAAGAGCTTGATTTGGGTAGGAATAATTTGACTGGCGAAATCCCGGATGAGATCTCAAGTTGCTCGGCTTTAGAATCGCTCCGTCTGAACTCGAATCATCTTTCCGGTCCCATACCAGAGTCGTTGTCAGAGCTCTCAAACTTAACCACGCTGGACCTCTCATCCAACAATTTGAGTGGCGTTATCCCTGCCAATCTTAGCTCCATTACTGGATTGATGAGCTTAAACGTTTCGAGTAATAATCTAGAAGGCAAAATTCCATCCTTGCTAGGCTCTAGATTCAACAGCTCATCTGTGTTTGCTAATAATTCTGGTTTATGTGGGAAACCATTGGCTCGGCATTGTAAAGATACAGAGAAAAAAGATAAAATGAAGAGATTGATTCTATTCATTGCAGTAGCCGCCAGTGGAGCTGTCCTCTTGACTCTGTGTTGCTGCTTCTACATTTTCAGCCTGTTGAGATGGCGAAAAAGGCTCAAAGACAGAGCATCTGGAGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCTGCTGGAAGTGGTGGTCGTGGAAGCTCAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATTACTCTAGCGGAAACAATCGAGGCAACAAGACAATTTGATGAAGAGAATGTTCTTAGCAGAACACGCTACGGATTGGTTTTCAAAGCCTGCTACAATGATGGCATGGTACTCTCAATCCGCCGCCTCTCGAATGGTTCATTAGATGAAAATATGTTCAGAAAAGAAGCTGAATCATTGGGAAAAGTTCGACACCGGAATCTAACTGTTCTTCGTGGCTATTATGCTGGCCCTCCTGATATGCGGCTGTTAGTATACGATTACATGCCTAATGGAAACCTTGCCACTCTCCTTCAAGAAGCATCTCATCAAGATGGTCATGTTTTGAATTGGCCAATGCGGCATCTCATTGCTCTTGGAATCGCCCGTGGCTTAGCCTTTCTTCATTCATCTTCCATTATCCATGGAGATGTCAAGCCACAAAGCGTTCTATTCGATGCAGATTTTGAAGCTCATTTGTCCGATTTCGGCCTTGACCGACTAACCGTTGCAGCCTCTGCTGAAGCATCTACGTCTACTTTGGTGGGCACATTAGGCTACATTGCCCCTGAAGCGGTATTGACAGGGGAAGCCACAAAGGAATCTGATGTCTACAGCTTTGGAATTGTGTTGCTTGAGATTCTAACAGGAAAGAAACCTGTGATGTTCACAGAAGATGAAGACATTGTCAAGTGGGTGAAAAAGCAATTGCAAAGAGGCCAAATTACTGAGCTCTTAGAACCAGGTTTACTTGAGTTGGATCCTGAATCATCAGAATGGGAAGAGTTCTTGCTGGGAGTGAAAGTTGGATTACTTTGCACTGCACCTGATCCTCGTGACCGTCCGACGATGTCCGATATTGTTTTCATGCTCGAAGGTTGCCGAGTTGGACCCGACATCCCTTCCTCCGCCGATCCCACCTCCCAACCATCACCGGCATAA 3297 45.56 MSFKLNLHDPLGALTAWDSSTPLAPCDWRGVVCTNNRVTELRLPRLQLSGRLTDQLANLRMLRKFSIRSNFFNGTIPSSLSKCALLRSVFLQYNLFSGGFPAEFGNLTNLHVLNVAENRLSGVISGDLPSSLKYLDLSSNAFSGQIPRSIVNMTQLQVVNLSFNRFGGEIPASFGELQELQHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGVIPAAIGALTNLQVISLSQNGLSGSVPYSMFCNVSSHAPSLRIVQLGFNAFTDIVKPQTATCFSALQVLDIQHNQIRGEFPLWLTGVSTLSVLDFSVNHFSGQIPSGIGNLSGLQELRMSNNSFHGEIPLEIKNCASISVIDFEGNRLTGEIPSFLGYMRGLKRLSLGGNRFSGTVPASLGNLLELEILNLEDNGLNGTLPLELMGLGNLTVMELGGNKLSGEVPTGIGNLSRLEILNLSANSLSGIIPSSLGNLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGNVPEGFSSLVGLRYLNLSSNGFSGQIPSNYGFLRSLVSLSLSDNHITGLVPSDLGNCSDLETLEVRSNALSGHIPADLSRLSNLQELDLGRNNLTGEIPDEISSCSALESLRLNSNHLSGPIPESLSELSNLTTLDLSSNNLSGVIPANLSSITGLMSLNVSSNNLEGKIPSLLGSRFNSSSVFANNSGLCGKPLARHCKDTEKKDKMKRLILFIAVAASGAVLLTLCCCFYIFSLLRWRKRLKDRASGEKKTSPARVSSAGSGGRGSSENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTVAASAEASTSTLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5986660 5990083 + MELO3C007887.2.1 Cme08g00910 335173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00910 1098 Gene3D Transferase(Phosphotransferase) domain 1 881 1084 - -
Cme08g00910 1098 Pfam Leucine rich repeat 544 604 IPR001611 GO:0005515
Cme08g00910 1098 Pfam Leucine rich repeat 617 676 IPR001611 GO:0005515
Cme08g00910 1098 Pfam Leucine rich repeat 493 531 IPR001611 GO:0005515
Cme08g00910 1098 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515
Cme08g00910 1098 MobiDBLite consensus disorder prediction 763 777 - -
Cme08g00910 1098 Gene3D Ribonuclease Inhibitor 422 718 IPR032675 -
Cme08g00910 1098 SMART LRR_sd22_2 129 155 - -
Cme08g00910 1098 SMART LRR_sd22_2 225 252 - -
Cme08g00910 1098 SMART LRR_sd22_2 639 668 - -
Cme08g00910 1098 SMART LRR_sd22_2 591 614 - -
Cme08g00910 1098 SMART LRR_sd22_2 423 449 - -
Cme08g00910 1098 ProSiteProfiles Leucine-rich repeat profile. 593 615 IPR001611 GO:0005515
Cme08g00910 1098 SUPERFAMILY Protein kinase-like (PK-like) 784 1086 IPR011009 -
Cme08g00910 1098 MobiDBLite consensus disorder prediction 758 785 - -
Cme08g00910 1098 PRINTS Leucine-rich repeat signature 450 463 - -
Cme08g00910 1098 PRINTS Leucine-rich repeat signature 639 652 - -
Cme08g00910 1098 Gene3D Ribonuclease Inhibitor 1 127 IPR032675 -
Cme08g00910 1098 Pfam Leucine rich repeat N-terminal domain 1 33 IPR013210 -
Cme08g00910 1098 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 1094 - -
Cme08g00910 1098 Pfam Protein kinase domain 815 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00910 1098 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515
Cme08g00910 1098 Pfam Leucine Rich Repeat 131 152 IPR001611 GO:0005515
Cme08g00910 1098 Gene3D Phosphorylase Kinase; domain 1 779 880 - -
Cme08g00910 1098 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 1 1094 - -
Cme08g00910 1098 Gene3D Ribonuclease Inhibitor 217 320 IPR032675 -
Cme08g00910 1098 Gene3D Ribonuclease Inhibitor 321 421 IPR032675 -
Cme08g00910 1098 Gene3D Ribonuclease Inhibitor 128 216 IPR032675 -
Cme08g00910 1098 SUPERFAMILY L domain-like 7 270 - -
Cme08g00910 1098 ProSiteProfiles Protein kinase domain profile. 805 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g00910 1098 SMART LRR_typ_2 423 446 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 495 518 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 107 130 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 447 470 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 225 249 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 153 176 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 177 200 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 543 566 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 375 399 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 639 663 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 591 615 IPR003591 -
Cme08g00910 1098 SMART LRR_typ_2 327 351 IPR003591 -
Cme08g00910 1098 SUPERFAMILY RNI-like 278 581 - -
Cme08g00910 1098 SUPERFAMILY L domain-like 542 701 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00910 Cme-Chr8:5986660 Cme05g00654 Cme-Chr5:7055603 3.65E-167 dispersed
Cme02g00927 Cme-Chr2:12940214 Cme08g00910 Cme-Chr8:5986660 6.22E-27 transposed
Cme03g01012 Cme-Chr3:19216972 Cme08g00910 Cme-Chr8:5986660 1.26E-60 transposed
Cme03g01124 Cme-Chr3:20719376 Cme08g00910 Cme-Chr8:5986660 7.89E-12 transposed
Cme05g01997 Cme-Chr5:28490768 Cme08g00910 Cme-Chr8:5986660 9.04E-07 transposed
Cme09g01287 Cme-Chr9:17788528 Cme08g00910 Cme-Chr8:5986660 2.98E-156 transposed
Cme10g00438 Cme-Chr10:2796559 Cme08g00910 Cme-Chr8:5986660 9.15E-10 transposed
Cme10g00771 Cme-Chr10:4995251 Cme08g00910 Cme-Chr8:5986660 8.91E-56 transposed
Cme07g01698 Cme-Chr7:22537336 Cme08g00910 Cme-Chr8:5986660 7.28E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65083 PF00069 Pkinase 4.20E-35 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00910 - - csv:101203208 2063.89