Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00912 ATGACATCGACGGGAGAAGCTGCAGAAGTGAAAGTTCCGGCGGAGGATGTTGCTCCTGTGGAGGTTGTTCCGGCTACGGAGGAGCCGAAGGAGGTAGAGAAGCCGGTGAAGGAGAAGAAACCTAGAGCTCCGAGGGAGAAGAAGCCTAGACAGTCTAAAGTTGCTTCACATCCACCGTATTTTCAGATGATCAATGAAGCAATCTCGTCACTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCGAAATACATGGAGGAAAAACACAAGGCGGTTCTTCCAGCGAATTTCAGGAAAATATTGGCTCTTCAATTGAAGAATTCCACAGCTAAAGGAAAATTGACGAAGATCAAGGCATCGTATAAGCTCTCCGAAATAGGAAAGAAAAAAGATAAGAACGCAACGAAAGTCGCAAAAGCGAACGCCGAGAAGATAACAAAACAGGCGAGAACGACGAGAACTACTGGAAGGAAAAGGAAGGCGGTGAAGAAGGAGGAGGCGGTGAGTAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGGTCTACTCCGGCGAAGCCGAAACAGCCGAAATCAATTAAGTCTCCTGCAGCGAAGAGGGCTAAAAAAGCGGTTGTGTGA 627 47.69 MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPYFQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKASYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKKPKRSTPAKPKQPKSIKSPAAKRAKKAVV 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6015477 6017122 - MELO3C007889.2.1 Cme08g00912 335175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00912 208 SMART h15plus2 54 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00912 208 MobiDBLite consensus disorder prediction 131 208 - -
Cme08g00912 208 MobiDBLite consensus disorder prediction 175 208 - -
Cme08g00912 208 MobiDBLite consensus disorder prediction 160 174 - -
Cme08g00912 208 CDD H15 55 137 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00912 208 MobiDBLite consensus disorder prediction 1 60 - -
Cme08g00912 208 PANTHER HISTONE H1 7 207 - -
Cme08g00912 208 Pfam linker histone H1 and H5 family 57 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00912 208 MobiDBLite consensus disorder prediction 26 42 - -
Cme08g00912 208 SUPERFAMILY Winged helix DNA-binding domain 55 136 IPR036390 -
Cme08g00912 208 PANTHER HISTONE H1 7 207 - -
Cme08g00912 208 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cme08g00912 208 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cme08g00912 208 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cme08g00912 208 PRINTS Histone H5 signature 148 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cme08g00912 208 PRINTS Histone H5 signature 181 198 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Cme08g00912 208 Gene3D - 51 142 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00912 K11275 H1_5; histone H1/5 - csv:101205007 261.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01797 Cme-Chr5:26895354 Cme08g00912 Cme-Chr8:6015477 9.83E-23 dispersed
Cme08g00656 Cme-Chr8:4284104 Cme08g00912 Cme-Chr8:6015477 2.26E-09 dispersed
Cme09g01371 Cme-Chr9:18944938 Cme08g00912 Cme-Chr8:6015477 8.98E-06 dispersed
Cme08g00912 Cme-Chr8:6015477 Cme07g02198 Cme-Chr7:26234995 2.18E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1091 Blo04g00891 . . . . . . . . . Cma03g00698 . Car03g00642 . Sed08g1603 . Cpe10g00652 Bhi03g00883 Tan03g2056 Cmetu04g0515 . Hepe04g1578 . . Cla01g01965 Cam01g2057 Cec04g1715 Cco04g1780 Clacu01g2078 Cmu01g1955 Cre04g1629 Cone8ag0839 Cone12ag0726 . . Lsi01g00617 . . Cme08g00912 . . . . . . Bma03g00967 . . Cmo03g00725 . . . . . . . . . . . . . . . . . . . . . . Csa06g03310 Chy02g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012514 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00912 Cme_Chr08 FPKM 3.734959 4.72148 25.903782 27.49453 125.877312 152.01506 118.17997 29.034143 26.402016 28.007109