Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00920 ATGGCAATTAGTCATCAGCATCTCAAACTGGAAGACCCTTTTCTTCATAATTACAAGCCCTCGGAGCTAAAGATCGCTTCTGAGTTTCTCACCACTTGGCTTCCGTTTCTTTCCAAGGATCTCTGCGGAGGCTGCACCAAATTGCTCTCGGATCGTATCCGCACCCTCGATCCAGCCGACCGTTCCGACGAGAATTCAGGTTCTGCACCACCAGTGGAAGACATGCATGAAAGTAACGGTAATCAGGATGATGCTTTTGATGCAAATTCTCTTGGAAGTTGGAAAGATGAAGCGGAAACAAATTCATTAGGGAGTTGGAAAGATGGCATGAACGGAGGGAATGAAGCTGATGGAGGACCTGAAAATTCTTCTAGTGATCTGCCCTCTAAATTAAATTCCACCAAGACCTCAGGCCCTCGAATGTCGTGGGCTGATATGACTCAGGAAGATGAACTAGAAGAAGAGGAAGATGAGTATGAATCAGAAAAAAGATTAGTGAGTCTTAATGAGTCCACACGGAAGTTAACAATATCGAAGGTTATTGAGAGGCCAAAGCTGTCTAGAGAGCAGAGAGAGCATATCAGATTCATGAATGTTGGACGGAAGAAAGATTTTATTTGTCTGGAGAGGTTTAAAGGAAAACTAGTGAATATTCTTGAAGGACTTGAACTTCATACGTGTATTTTTAGTGCTGCAGAACAGACGAGAATAGTTGATCATGTTTATGCACTTCAGGAGATGGGCAAGAGGGGTGAATTAAGAGCTCCCAAAAAGTGGATGAAGGGAAAGGGGCGTGTAACTATGCAGTTTGGGTGCTGTTACAATTATGCACCTGATAAAAATGGCAATCCTCCTGGAATTCTTCGAAGTGAAATTGTGGATCCAATACCTTCTCTCTTTAAGGTGATCATTAGAAGGTTGGTGAGGTGGCATGTGCTTCCTCCAACATGTGTTCCTGATAGTTGCATTGTGAACATCTATGACGAAGGGGACTGTATTCCTCCACATATTGACAACCACGATTTTGTTCGACCTTTTTGCACTGTGTCATTTCTCAGTGAATGCAATATTGTTTTTGGAACAAATCTTTCTATTGTAGGACCAGGTGAATTTTCAGGGCCAATTGCAATCCCTCTGCCTGTGGGGTCCGTTCTTGTGTTAAATGGAAATGGAGCTGATGTTGCTAAGCATTGTGTACCTGCAGTCCCTACAAAGAGAATATCAATTACATTTAGAAGGATAGACGAGTCCAAAAGGCCAATTGAGTATTCTTCAGAACCGGATTTACAGGGAATCCAACCATTGCCCTATGAAGCAAGAGTAAATGATGTACCACCTTCTCCTGTATCATCGGAAAGGGAAATAAGGAGGCAGCCATTTAGGGGGGGTGGCCATATGAGAACCAGGGGATCTGGGAACAGAGGCGACCCTCGATATGATCCACAGAATCCAGGTAGAGGAGCTCGACATAGTTCAGCAGATAAGAAGAGCAGAGTAAATTGA 1503 43.51 MAISHQHLKLEDPFLHNYKPSELKIASEFLTTWLPFLSKDLCGGCTKLLSDRIRTLDPADRSDENSGSAPPVEDMHESNGNQDDAFDANSLGSWKDEAETNSLGSWKDGMNGGNEADGGPENSSSDLPSKLNSTKTSGPRMSWADMTQEDELEEEEDEYESEKRLVSLNESTRKLTISKVIERPKLSREQREHIRFMNVGRKKDFICLERFKGKLVNILEGLELHTCIFSAAEQTRIVDHVYALQEMGKRGELRAPKKWMKGKGRVTMQFGCCYNYAPDKNGNPPGILRSEIVDPIPSLFKVIIRRLVRWHVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGTNLSIVGPGEFSGPIAIPLPVGSVLVLNGNGADVAKHCVPAVPTKRISITFRRIDESKRPIEYSSEPDLQGIQPLPYEARVNDVPPSPVSSEREIRRQPFRGGGHMRTRGSGNRGDPRYDPQNPGRGARHSSADKKSRVN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6050382 6054707 + MELO3C007897.2.1 Cme08g00920 335183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00920 500 MobiDBLite consensus disorder prediction 82 108 - -
Cme08g00920 500 Pfam 2OG-Fe(II) oxygenase superfamily 229 412 IPR027450 -
Cme08g00920 500 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 318 415 IPR005123 -
Cme08g00920 500 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 5 479 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cme08g00920 500 Coils Coil 145 169 - -
Cme08g00920 500 MobiDBLite consensus disorder prediction 421 500 - -
Cme08g00920 500 MobiDBLite consensus disorder prediction 57 163 - -
Cme08g00920 500 MobiDBLite consensus disorder prediction 117 143 - -
Cme08g00920 500 PANTHER RNA DEMETHYLASE ALKBH9B 5 479 - -
Cme08g00920 500 SUPERFAMILY Clavaminate synthase-like 218 414 - -
Cme08g00920 500 Gene3D - 206 422 IPR037151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00920 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - csv:101203292 947.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01271 Cme-Chr6:10517840 Cme08g00920 Cme-Chr8:6050382 1.69E-35 dispersed
Cme08g00920 Cme-Chr8:6050382 Cme10g01563 Cme-Chr10:20470961 2.08E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00920 Cme_Chr08 FPKM 3.532763 3.534229 9.41235 9.890528 31.147379 36.296917 27.326962 0.10619 0.133875 0.198782