Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00928 ATGGAACAGTGGAAGTCCGGAGATTTCTCTCAATCTAGTGTACCAGCTGATTTAGTTCCTTCCTCGTCTCTTCAGCCTCAGCCTCTTGCTGTGTCCTCCACTCGCCACCATAGCAACCAGCTTACTGAATCCAGGTTAAGAACAGATGCAGAAGTAAAAGATCCCATAGCAGTGAGAAAAATTCAAAAAGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAACGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCCATAGATTAAAGGCTGACTATGAAGCTCTTTCTGAAGAATCACGTGAGCTAACCCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGACTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCGGTTGTCATGGGGCCCCCATATTCCTACCCAGTTCCTGTTCCTGTTCCCCCTGGGCCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTCGGAAATCAGAATCCCGGCGCTATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGATCAGCCATCCGCCCAATATGCTTCCAACTCACATATATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGTGGAAAGATGTGATGAATCTACCGATGTAGCCACGGACCTTGAACTTAAGATGCCTGGATCTTCAACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGCTAAGCAGTCGCAAAGGAAAGAAAAAAGTGTCACGGATTGTAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGCGTTGGCGACATCCCAAAACAGAACAACTAA 1005 44.98 MEQWKSGDFSQSSVPADLVPSSSLQPQPLAVSSTRHHSNQLTESRLRTDAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVHRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAQYASNSHISSKQDSRSKSSDQHRRSNVERCDESTDVATDLELKMPGSSTQQDASSGSKKAKQSQRKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6123063 6126600 - MELO3C007905.2.1 Cme08g00928 335191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00928 334 Pfam Helix-loop-helix DNA-binding domain 59 108 IPR011598 GO:0046983
Cme08g00928 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 108 IPR011598 GO:0046983
Cme08g00928 334 MobiDBLite consensus disorder prediction 1 48 - -
Cme08g00928 334 MobiDBLite consensus disorder prediction 306 334 - -
Cme08g00928 334 MobiDBLite consensus disorder prediction 276 291 - -
Cme08g00928 334 PANTHER TRANSCRIPTION FACTOR BHLH121 33 333 IPR044579 GO:0003700|GO:0055072
Cme08g00928 334 MobiDBLite consensus disorder prediction 230 334 - -
Cme08g00928 334 MobiDBLite consensus disorder prediction 246 271 - -
Cme08g00928 334 CDD bHLH_AtILR3_like 63 137 - -
Cme08g00928 334 MobiDBLite consensus disorder prediction 230 245 - -
Cme08g00928 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 128 IPR036638 GO:0046983
Cme08g00928 334 SMART finulus 64 114 IPR011598 GO:0046983
Cme08g00928 334 MobiDBLite consensus disorder prediction 1 39 - -
Cme08g00928 334 Gene3D - 57 160 IPR036638 GO:0046983
Cme08g00928 334 PANTHER TRANSCRIPTION FACTOR BHLH11 33 333 - -
Cme08g00928 334 Coils Coil 98 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01892 Cme-Chr2:25430915 Cme08g00928 Cme-Chr8:6123063 3.81E-22 dispersed
Cme08g00928 Cme-Chr8:6123063 Cme12g01447 Cme-Chr12:22226137 4.55E-15 dispersed
Cme08g00928 Cme-Chr8:6123063 Cme11g00758 Cme-Chr11:9430545 5.59E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41830 PF00010 HLH 6.40E-09 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00928 - - csv:101222613 561.607