Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00937 ATGGCTTCCATTCATTTCTTCTTCTTATCATTCTCTCTCTTCTTCCACTTTCTCTCTTATTCTGCAACCATCACACTCCAAAACAACTGCACTCACACCATTTGGCCCGCCATTTTATCCGGCGCCGGAACCGCCCCTCTCTCCACCACCGGCTTCTCCCTCCTCCCCTCCGCCTCCTCCCTCCTCTCCGTCCCCACCTCTTGGTCCGGCCGCATTTGGGCTCGAACCTACTGCTCCACCGACCCCTCCTCCGGCCGCTTCTCCTGCGCCACCGCCGACTGCGGCTCCGGCTCCGTAGAGTGTGGCGGCGCCTGCGCTACCCCACCCGCCACACTCGCCGAATTCACCCTTAACGGAGGTGGCGGCTTCGATTTCTACGACGTCAGCCTCGTGGATGGGTACAACATCGCGATGCAGATCGTAGCGGTGGGCGGAAAATCGGGGAACTGTACGACGACGGGTTGCATTGAGGATTTGAACGAAGAATGTCCAGGGGAGCTGCGGGTGGTGATGGGTGGGGGGAACCGAAGCGTGGCGTGTAGAAGCGGGTGTGTGGCGTTTGGGAAAGCGGAATATTGTTGTAGTGGGGTTTATGCAAATCCGAACACTTGCAAGCCCAGTAATTACTCCAAATATTTCAAGAATCATTGCCCCTTGGCTTACAGTTACGCTTTTGATGACGGTACCAGCACTTTCACTTTGAAGGAATCTAGTGAACCACAACCACAAGCGGCTGACATTTCAGATTGCCGGCGTCGCATTGCTCCGCAGTCTTTAGCTATTTTCACCGCTGTGTGGGCGGCTGTGGCATCTCTTTCTACACTGCCAAATTTTTCGTTGAATATTTAA 849 54.89 MASIHFFFLSFSLFFHFLSYSATITLQNNCTHTIWPAILSGAGTAPLSTTGFSLLPSASSLLSVPTSWSGRIWARTYCSTDPSSGRFSCATADCGSGSVECGGACATPPATLAEFTLNGGGGFDFYDVSLVDGYNIAMQIVAVGGKSGNCTTTGCIEDLNEECPGELRVVMGGGNRSVACRSGCVAFGKAEYCCSGVYANPNTCKPSNYSKYFKNHCPLAYSYAFDDGTSTFTLKESSEPQPQAADISDCRRRIAPQSLAIFTAVWAAVASLSTLPNFSLNI 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6165372 6166939 + MELO3C007912.2.1 Cme08g00937 335200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00937 282 PANTHER - 18 234 - -
Cme08g00937 282 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
Cme08g00937 282 SUPERFAMILY Osmotin, thaumatin-like protein 22 235 IPR037176 -
Cme08g00937 282 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Cme08g00937 282 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Cme08g00937 282 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Cme08g00937 282 ProSiteProfiles Thaumatin family profile. 21 233 IPR001938 -
Cme08g00937 282 Pfam Thaumatin family 28 236 IPR001938 -
Cme08g00937 282 PIRSF PR5 1 261 IPR001938 -
Cme08g00937 282 PANTHER OS03G0233200 PROTEIN 18 234 IPR001938 -
Cme08g00937 282 Gene3D Thaumatin 22 245 IPR037176 -
Cme08g00937 282 CDD TLP-PA 23 239 - -
Cme08g00937 282 SMART tha2 24 240 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00937 - - - csv:101222533 515.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00937 Cme-Chr8:6165372 Cme11g00396 Cme-Chr11:4012861 1.72E-90 dispersed
Cme08g00937 Cme-Chr8:6165372 Cme08g00938 Cme-Chr8:6173985 3.78E-77 tandem
Cme03g01872 Cme-Chr3:26947101 Cme08g00937 Cme-Chr8:6165372 3.80E-80 wgd
Cme04g00460 Cme-Chr4:3668049 Cme08g00937 Cme-Chr8:6165372 2.19E-86 wgd
Cme06g02378 Cme-Chr6:30996366 Cme08g00937 Cme-Chr8:6165372 1.43E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00937 Cme_Chr08 FPKM 5.386555 4.969007 5.031479 5.144566 13.041595 10.516322 12.991898 7.348853 6.917266 7.498384