Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00938 ATGGGGACGCTCTGCTATTTGAGACATTCTTCTCCCTTATTCTCCACCTTGATTGTGCTTCTTCTTCTCAAAGAGGTTTCCGGTGCTACATTCACGTTCGTTAACAAGTGTGATTACACCGTCTGGCCGGGAATTCTCGCCAGTTCAGGCAGCCCGAAACTCGAAACCACCGGTTTCGAGCTTCAAGCGGGCAACTCTCGCTCTTTGCAAGCTTCAACCGGCTGGTCCGGTCGGTTCTGGGGCCGAACCAAATGCAATTTCGACGACTCCGGGCGTGGCAGCTGCAACACCGGCGACTGCGGCTCTGGAGAGATAGAGTGCAACGGCGCCGGTGCCACGCCTCCGGCGACGTTAGCCGAATTCACACTCGGCTCTGGCTCACAGGACTTCTACGACGTTAGCCTAGTGGATGGCTACAATCTGCCGATGATCGTGGAGGGAACCGGCGGGTCCGGCACGTGCGCGTCAACCGGCTGCATTACGGACCTGAACCAACTTTGCCCGGCTGAGCTGAAAGCGGAGGATGGCGGCGCGTGTAAAAGTGCTTGTGAAGCATTTGAGACGCCGGAGTACTGCTGCAGCGGCGAGTACAACTCACCGGCTACTTGCCGGCCGTCAATGTACTCACAAATGTTTAAATCGGCGTGCCCTAAATCGTACAGTTACGCGTATGATGACGCTACTAGCACATTCACTTGCAATGGAGCTGACTACACCATCACATTTTGCCCTTCTTCCCCAAGTCGGAAATCTTCAAGTGATTCATCACCAATGGTACCAGAGTCAAATACACAGACTGAATCAGAACCAGAGTCAAAATCAGATTCAGGAACAATACAAGGAGCAGCTTTGAGTAGTTCTTGGCTTGCAAATATGGCCATTGGAGGAGACTCATCTATGGCCAAGAAACCAAGCGTGGGATTTCAATATGTTTCAATTTTGATATTCAATTTGGTTCTATCTTTGGTTCTCTCATAG 978 51.64 MGTLCYLRHSSPLFSTLIVLLLLKEVSGATFTFVNKCDYTVWPGILASSGSPKLETTGFELQAGNSRSLQASTGWSGRFWGRTKCNFDDSGRGSCNTGDCGSGEIECNGAGATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIVEGTGGSGTCASTGCITDLNQLCPAELKAEDGGACKSACEAFETPEYCCSGEYNSPATCRPSMYSQMFKSACPKSYSYAYDDATSTFTCNGADYTITFCPSSPSRKSSSDSSPMVPESNTQTESEPESKSDSGTIQGAALSSSWLANMAIGGDSSMAKKPSVGFQYVSILIFNLVLSLVLS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6173985 6176332 + MELO3C007913.2.1 Cme08g00938 335201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00938 325 Gene3D Thaumatin 29 244 IPR037176 -
Cme08g00938 325 SUPERFAMILY Osmotin, thaumatin-like protein 29 245 IPR037176 -
Cme08g00938 325 PANTHER OS03G0233200 PROTEIN 16 264 IPR001938 -
Cme08g00938 325 ProSiteProfiles Thaumatin family profile. 28 244 IPR001938 -
Cme08g00938 325 ProSitePatterns Thaumatin family signature. 91 107 IPR017949 -
Cme08g00938 325 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Cme08g00938 325 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Cme08g00938 325 PRINTS Pathogenesis-related protein signature 91 120 IPR001938 -
Cme08g00938 325 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Cme08g00938 325 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Cme08g00938 325 MobiDBLite consensus disorder prediction 248 279 - -
Cme08g00938 325 Pfam Thaumatin family 35 244 IPR001938 -
Cme08g00938 325 CDD TLP-PA 30 243 - -
Cme08g00938 325 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 16 264 - -
Cme08g00938 325 SMART tha2 31 244 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00938 - - - csv:101222295 587.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01872 Cme-Chr3:26947101 Cme08g00938 Cme-Chr8:6173985 9.51E-125 dispersed
Cme03g01981 Cme-Chr3:27651381 Cme08g00938 Cme-Chr8:6173985 1.52E-87 dispersed
Cme06g02378 Cme-Chr6:30996366 Cme08g00938 Cme-Chr8:6173985 5.94E-136 dispersed
Cme08g00938 Cme-Chr8:6173985 Cme11g00395 Cme-Chr11:3999311 1.02E-125 dispersed
Cme09g00117 Cme-Chr9:873771 Cme08g00938 Cme-Chr8:6173985 9.08E-81 dispersed
Cme09g00813 Cme-Chr9:10471880 Cme08g00938 Cme-Chr8:6173985 6.27E-77 dispersed
Cme10g00455 Cme-Chr10:2890111 Cme08g00938 Cme-Chr8:6173985 9.13E-68 dispersed
Cme12g01834 Cme-Chr12:24724103 Cme08g00938 Cme-Chr8:6173985 1.27E-86 dispersed
Cme08g00937 Cme-Chr8:6165372 Cme08g00938 Cme-Chr8:6173985 3.78E-77 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00938 Cme_Chr08 FPKM 19.081871 24.955799 4.059412 4.692441 18.455124 14.673567 15.735598 5.254699 5.915438 4.472146