Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00943 ATCCTGCGAAGCACCAGATCGCATCCCCTTTGGCTCAGCCAACAAGCAAAGATTTGCAGGGAAGATCGAAGTGTTGTGTGTAGCGCCAGATTCATCTTCCATAGTTCTACATCTTCAACGATGGTGCTCGAGGCGACTATGATCTGTATTGACAATTCCGAATGGATGCGTAATGGCGATTACGCTCCTTCAAGATTTCAAGCTCAAGCAGATGCCATCAATCTTATTTGTGGAGCTAAGACGCAGTCTAATCCAGAGAACACGGTTGGGGTTCTCACAATGGCGGGAAAAGGTGTTCGTGTGCTGGTTACGCCCACCACTGACCTGGGCAAGATACTGGCATGCATGCACGGTTTGGAGATAGGGGGTGAGATAAACCTAGCAGCTGGCATCCAGGTAGCTCAGTTGGCTCTTAAGCATCGTCAGAACAAAAAGCAGCAACAAAGGATTATAGTTTTTGTTGGCAGTCCTGTCAAACACGAGAAAAAGTTACTGGAGATGATCGGAAGGAAGTTGAAGAAGAACAATGTGGCCCTTGACATTGTTGATTTTGGCGAAGAAGATGATGGCAAACCTGAGAAACTGGAAAGTCTTCTGGCAGCTGTGAATAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTGCTCTCTGATGTACTCATCAGTACACCTATCTTTACTGGAGATGGCGAAGGTGGAAGTGGTTTTGCAGCAGCTGCAGCAGCTGCTGCTGCTGGTGGCGTATCTGGTTTCGATTTTGGAGTTGATCCCAACTTAGATCCTGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAGGCAGCTGCGAAAAAGGCTGCAGAGGAGAATACAAAGCAAGAAAAAGGAGCTGAGCAGCCATCTGGTTCACAGGATGCAACTATGACCGAGCGCCCTGGCCTTGCGACATCTGATGCTGAAAACAAGGCTGCTGATTTAATGGATGATGAGAATGCACTGCTACAACAAGCCCTTGCTATGTCAATGGATAATCCTTCGGGTACCAGTGACATACGAGATATTGACATGTCAGAAGCAGCATCAGACGATCCTGAGTTGGCACTTGCTCTTCAATTGTCTGTGCAGGAAGGCTCCAGTGATTCGTCAAGCCAGACGGATATGAGTAAATTGTTGGCCGATCAGTCTTTTGTGTCTTCTATTCTTGCTTCACTTCCAGGCGTAGATCCAAATGATCCCTCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCAGAGGATAAGAAAGATGAAGAGAAATCATCAAAGGAAGATGAGAAATGA 1332 46.7 ILRSTRSHPLWLSQQAKICREDRSVVCSARFIFHSSTSSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEMIGRKLKKNNVALDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKGAEQPSGSQDATMTERPGLATSDAENKAADLMDDENALLQQALAMSMDNPSGTSDIRDIDMSEAASDDPELALALQLSVQEGSSDSSSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEDKKDEEKSSKEDEK 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6201204 6206325 + MELO3C007918.2.1 Cme08g00943 335206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00943 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 41 443 - -
Cme08g00943 443 MobiDBLite consensus disorder prediction 425 443 - -
Cme08g00943 443 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 262 281 IPR003903 -
Cme08g00943 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 41 443 - -
Cme08g00943 443 MobiDBLite consensus disorder prediction 299 314 - -
Cme08g00943 443 MobiDBLite consensus disorder prediction 280 298 - -
Cme08g00943 443 Gene3D von Willebrand factor, type A domain 43 226 IPR036465 -
Cme08g00943 443 MobiDBLite consensus disorder prediction 345 365 - -
Cme08g00943 443 MobiDBLite consensus disorder prediction 405 443 - -
Cme08g00943 443 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 364 383 IPR003903 -
Cme08g00943 443 SMART VWA_4 42 215 IPR002035 -
Cme08g00943 443 Coils Coil 421 441 - -
Cme08g00943 443 Coils Coil 272 297 - -
Cme08g00943 443 Pfam Ubiquitin interaction motif 332 345 IPR003903 -
Cme08g00943 443 Pfam Ubiquitin interaction motif 364 379 IPR003903 -
Cme08g00943 443 Pfam Ubiquitin interaction motif 264 277 IPR003903 -
Cme08g00943 443 ProSiteProfiles VWFA domain profile. 45 229 IPR002035 -
Cme08g00943 443 MobiDBLite consensus disorder prediction 280 318 - -
Cme08g00943 443 Pfam von Willebrand factor type A domain 46 154 IPR002035 -
Cme08g00943 443 Gene3D - 260 351 - -
Cme08g00943 443 SMART uim 262 281 IPR003903 -
Cme08g00943 443 SMART uim 332 351 IPR003903 -
Cme08g00943 443 SMART uim 364 383 IPR003903 -
Cme08g00943 443 SUPERFAMILY vWA-like 44 215 IPR036465 -
Cme08g00943 443 CDD VWA_26S_proteasome_subunit 41 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00943 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - csv:101221273 706.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02376 Cme-Chr6:30984443 Cme08g00943 Cme-Chr8:6201204 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00943 Cme_Chr08 FPKM 5.044254 4.97457 6.50884 4.674111 40.805157 35.145576 43.337383 9.950775 12.19495 10.367123