Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00947 ATGCTACAAGACATGTGGAACGCACCTCCGGGCTTCAGGCCTTCCAAATCCGCCCCTTCTTCTCCGGCCAAGCCTCTTGCCGTCTCCCGGCTCCGTCCCGATCCATACCATGTCACTCACAAGGTTCCAGTTGGGGATACTCCCTACGTTAGGGCAAAAAATGTTCAGTTGGTGGCTAAGGATCCGGATAAGGCGATTCCTCTCTTTTGGGCTGCCATTAATGCAGGGGACAGAGTTGATAGTGCCTTGAAAGATATGGCTATTGTGATGAAACAGCAGAATCGAGCTGAAGAAGCGATTGAAGCGATTAAATCATTGCGAAATCGGTGTTCCGATCAGGCTCAGGAGTCTCTGGATAATATTCTTCTTGATTTATACAAGAGGTGTGGAAGATTAGATGACCAGGTAGCTCTTTTGAAGCATAAACTGTTCTTGATTCAACAAGGTTTAGCGTTTAATGGTAAGCGGACCAAAACCGCGCGATCTCAAGGAAAAAAGTTTCAAGTTTCTGTAGAGCAAGAAGCAACTCGATTACTGGGGAATTTGGGATGGGCACTGATGCAACAGAACAACTATGTTGAAGCAGAAGATGCTTATAGAAAAGCACTTACAATTGCTCCAGATAACAACAAAATGTGTAACCTTGGAATCTGTTTGATGAAACAAGGGAGAATTTCCGAGGCAAAAGAGAACCTAAGAAGAGTTAAACCAGCAGTTATAGATGGGCCAAGAGGCACAGATTCTCATCTCAAAGCTTATGAAAGAGCACAACAAATGCTCAAAGATCTCGAGTCCGAAATGATGAATAGAGGAGGCGACAGGCTCGAACAAAGGCGATTATTCGACGCCTTTCTCGGTTCTTCGTCGATTTGGCAACCTCAGCCTTGCAAGGATCATACAACAACCACCTTACCAACATTACCTGTCACAAATCCTGTTAGGACAATTCAAGATGATTTTGGCGACGAGAACATTGATACGAACATGTTAACAAACCAAATGGTTGCTCCTCCTCAACAACAGAAGTTTATCAAACAAGTTCAAGTTCCTTTAGGGAACTCATTGAATGTTGCTGCACAACCATTTTTTTTATCAAAATTTGTAAGTGAACCCACTAGTAAAGTCCCATTGGGAAACCAATTTCCTGAAGGTCTGAAGAGAACAAGGTCTGGAAATGCAGCCAACTCAATGAGAGCGAATGATTTGGTGGAAATAACAAGGCCATTTTTAGCAGAATTTGGAAAGACAGAAACTAAGACAAGAAAGCCATTTTCCACATCAGAAGAGACAGATAAATGGGCAGAAATGTTGCCTGATGACAATGATTTTGAAGAGGCTATTCTTGCTGCAGTTCTGGGATCAACAGATGATGAAGCAGAGAAGAAAACAGCAGCCAATGCCAATGCCGGTGCCGGTGCCGGTGGCGGAGGTGGTGGCTGCGTTGTTCAGAGAAAAATTGAGAAAAGGCTCAAGGTTTTTGAAGACATTACACTTTCCTTGAGTCCCAGAGCCTAA 1515 43.76 MLQDMWNAPPGFRPSKSAPSSPAKPLAVSRLRPDPYHVTHKVPVGDTPYVRAKNVQLVAKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRNRCSDQAQESLDNILLDLYKRCGRLDDQVALLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYVEAEDAYRKALTIAPDNNKMCNLGICLMKQGRISEAKENLRRVKPAVIDGPRGTDSHLKAYERAQQMLKDLESEMMNRGGDRLEQRRLFDAFLGSSSIWQPQPCKDHTTTTLPTLPVTNPVRTIQDDFGDENIDTNMLTNQMVAPPQQQKFIKQVQVPLGNSLNVAAQPFFLSKFVSEPTSKVPLGNQFPEGLKRTRSGNAANSMRANDLVEITRPFLAEFGKTETKTRKPFSTSEETDKWAEMLPDDNDFEEAILAAVLGSTDDEAEKKTAANANAGAGAGGGGGGCVVQRKIEKRLKVFEDITLSLSPRA 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6224502 6226545 + MELO3C007922.2.1 Cme08g00947 335210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00947 504 Coils Coil 246 266 - -
Cme08g00947 504 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 501 IPR044961 -
Cme08g00947 504 SMART tpr_5 176 209 IPR019734 GO:0005515
Cme08g00947 504 Gene3D Tetratricopeptide repeat domain 54 238 IPR011990 GO:0005515
Cme08g00947 504 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 501 - -
Cme08g00947 504 SUPERFAMILY TPR-like 55 283 IPR011990 GO:0005515
Cme08g00947 504 Pfam Tetratricopeptide repeat 178 209 IPR001440 GO:0005515
Cme08g00947 504 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Cme08g00947 504 MobiDBLite consensus disorder prediction 458 478 - -
Cme08g00947 504 Coils Coil 89 116 - -
Cme08g00947 504 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00947 - - - csv:101220568 940.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00399 Cme-Chr6:2549157 Cme08g00947 Cme-Chr8:6224502 4.00E-103 dispersed
Cme08g00947 Cme-Chr8:6224502 Cme12g01076 Cme-Chr12:18662689 6.36E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1142 . . . Bda10g00191 . . . . . . . Cma07g00415 . Car07g00364 Sed14g1204 . Cpe10g00675 Bhi03g00842 Tan03g2099 Cmetu04g2642 . Hepe04g1607 . . . . . . . . . . . . Cone9ag1616 . . . Cme08g00947 . . . . Bpe10g00163 . . . . . Cmo07g00412 . . . . . . . . . . . . . . . . . . . . . Csa06g03345 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00947 Cme_Chr08 FPKM 51.275963 60.65815 83.961815 91.577576 81.44001 79.263054 81.691338 103.139091 105.318031 104.449532