Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00948 ATGGCGCCTCCCATAGTCGATGCTGTGTACCTGAAGGAAATCGAGAAGGCCCGTCGAGACCTTCGTGCTCTAATCTTCAAGGAGAAATGCGCTCCTATTATGCTCCGTCTAGCGTGGCATGATGCTGGTACTTATGACGCTAAAACGAAAACCGGAGGTCCCAATGGCTCCATCAGGTTCATGAAAGAATTGAACCATACTGCAAACAAGGGACTCAAAATCGCAGTTGATTTCTGCGAAACTGTGAAGGCCAGACATCCAAAAATCACATATGCAGATCTGTACCAGATTCTTCTTCTTAATCACCACGGAACCGAAAGGTTGAAGCTAATGGGTTACTTCAACACTTTCTTCATCCGTAGTTTCATCTATGAAGATGTGGCTCATTCTCCTTCAATTGTGAATTTCCAGCTCGCTGGAGTTGTTGCTGTGGAGATTACTGGCGGGCCATCCATTGACTTTGTCCCCGGAAGAAAGGACGCAAATGAAGCTGTAGAAGAAGGCCGCCTTCCAGATGCTCACCAAGGTGCTTCCCATTTAAGAGATGTATTTTGCAGGATGGGACTAACTGACAAGGATATTGTGGCATTATCTGGAGGACACACATTGGGAAGAGCTCACAAGGACAGATCAGATTTTGAAGGCCCATGGACAAAGGACTTTCTGAAGGAATTGCTGAAAAATAACTCTCGATCTGGGGAACAACTGTTGAAGCTTCCTACAGACAAGGCCTTGGTCACAGATTCTCAGTTTTCCCAATATGTGAAGGCATACGCAAAGGATGAAGACAAGTTTTTCGAGGATTATGCAGCATCTCACAAGAAACTGTCTGAGCTTGGCTTCACTAAACCTTCATCAGTTCTCGATGGCAGAGGCTCTGCATGGACAAACGGAATTGTGGTAGCTGCGATCATAGCAGTTGTGGGGATACTGAGTTACAAAAGAGGCATGTTACCTGAGGGGAATGCCTTTTTTCCAAATCTCTTCTGA 990 45.66 MAPPIVDAVYLKEIEKARRDLRALIFKEKCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRFMKELNHTANKGLKIAVDFCETVKARHPKITYADLYQILLLNHHGTERLKLMGYFNTFFIRSFIYEDVAHSPSIVNFQLAGVVAVEITGGPSIDFVPGRKDANEAVEEGRLPDAHQGASHLRDVFCRMGLTDKDIVALSGGHTLGRAHKDRSDFEGPWTKDFLKELLKNNSRSGEQLLKLPTDKALVTDSQFSQYVKAYAKDEDKFFEDYAASHKKLSELGFTKPSSVLDGRGSAWTNGIVVAAIIAVVGILSYKRGMLPEGNAFFPNLF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6226898 6231282 - MELO3C007923.2.1 Cme08g00948 335211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00948 329 Gene3D - 135 178 - -
Cme08g00948 329 Gene3D Peroxidase, domain 2 179 221 - -
Cme08g00948 329 ProSiteProfiles Plant heme peroxidase family profile. 138 300 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 2 97 IPR044831 GO:0004601|GO:0034599
Cme08g00948 329 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 136 313 IPR044831 GO:0004601|GO:0034599
Cme08g00948 329 SUPERFAMILY Heme-dependent peroxidases 8 97 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 PANTHER L-ASCORBATE PEROXIDASE 5, PEROXISOMAL 2 97 - -
Cme08g00948 329 PANTHER L-ASCORBATE PEROXIDASE 5, PEROXISOMAL 136 313 - -
Cme08g00948 329 SUPERFAMILY Heme-dependent peroxidases 137 282 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 Pfam Peroxidase 18 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g00948 329 CDD ascorbate_peroxidase 4 284 - -
Cme08g00948 329 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601
Cme08g00948 329 Gene3D Peroxidase, domain 2 222 272 - -
Cme08g00948 329 Gene3D - 5 98 - -
Cme08g00948 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 193 203 IPR019793 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00948 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101220337 489.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01269 Cme-Chr1:16035569 Cme08g00948 Cme-Chr8:6226898 2.35E-118 dispersed
Cme08g00948 Cme-Chr8:6226898 Cme12g00272 Cme-Chr12:3151422 1.17E-89 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1143 . . . Bda10g00192 . . . . . . . . . . Sed14g1205 . Cpe10g00676 Bhi03g00841 Tan03g2100 Cmetu04g0811 . Hepe04g1608 . . Cla01g01992 Cam01g2091 Cec04g1748 Cco04g1813 Clacu01g2109 Cmu01g1985 Cre04g1662 . . . . . . . Cme08g00948 . . . . Bpe10g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03346 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00948 Cme_Chr08 FPKM 26.122145 24.754303 3.724001 3.584221 4.091553 3.502149 4.450449 9.159171 8.949383 9.203607