Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00965 ATGTTATCCAGCTTGATGAACTTTCTGAGAGCTTGTTGGGTGCCGTCCTCGGACAATATAGTACACAGCGGTTCGGATTCAGCAGGCCGTCATGAAGGCTTACTATGGTACAAGGATATTGGACAACACATGAATGGTGAATTTTCTATGGCTGTTGTTCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATTGAATCGGGTTCATTGAGCTTCCTTGACTCCGGGCCATATGGAACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGATAATCTTTTCCAACATCTAAAAAGGTTCACCTCAGAACAGCAATCAATGTCCACTGATGTAATAAAAAAAGCATTTCAAGCTACAGAGGAAGGGTTCATTTCTTTAGTGACTAAACAATGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTTGGTGTGATTTGTGATGGCACCCTTTACATAGCTAACCTTGGTGATTCCCGTGCGGTGCTCGGAAGGCTCGTGGGGTCAACTGAGGAGGTTCTTGCCGTGCAGTTATCAGCAGAGCATAATGTGAGCATAGAATCAGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGATTCACATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTATTACAGGTTTCCAGATCTATCGGTGACGTGTATCTAAAGAAGCCGGAATTCAACAGGGAACCTTTGTATGCTAAGTTTAGGCTTCGTGAACCGTTCACTCGACCAATATTGAGCTGTGAACCATCAATCTCAGTCTATGAGCTTCAACCACATGATCAGTTCATCATATTTGCTTCTGATGGCCTGTGGGAGCACATTAGCAATCAGCAAGCTGTAGATCTGATTCGAAGTCACCCACATAATGGAAGTGCCAAGAGGCTGGTAAAATTTGCTATGCTAGAAGCAGCTAAAAAACGAGAAATGCGATATTCAGACTTGAAGGATATTGATCGTGGAATACGCCGCCATTTTCATGATGACATCACAGTCATAGTTGTATTTCTTGACTCTAATCTTGTAAGCAGAGCGAGCTCAGTCCGTGGCCCAACAACGTCTTTGAGGGGTGCTGGCAAGGCTTTCAGAATATTCAATCTCCATGGAGTTCTGCATTAG 1173 43.99 MLSSLMNFLRACWVPSSDNIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSFLDSGPYGTFIGVYDGHGGPEASNYVYDNLFQHLKRFTSEQQSMSTDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICDGTLYIANLGDSRAVLGRLVGSTEEVLAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLLQVSRSIGDVYLKKPEFNREPLYAKFRLREPFTRPILSCEPSISVYELQPHDQFIIFASDGLWEHISNQQAVDLIRSHPHNGSAKRLVKFAMLEAAKKREMRYSDLKDIDRGIRRHFHDDITVIVVFLDSNLVSRASSVRGPTTSLRGAGKAFRIFNLHGVLH 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6344338 6349147 + MELO3C007940.2.1 Cme08g00965 335228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00965 390 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Cme08g00965 390 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cme08g00965 390 Gene3D - 37 365 IPR036457 -
Cme08g00965 390 SMART PP2C_4 41 353 IPR001932 -
Cme08g00965 390 PANTHER ALPHABET, ISOFORM E-RELATED 6 382 - -
Cme08g00965 390 CDD PP2Cc 48 355 IPR001932 -
Cme08g00965 390 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 382 - -
Cme08g00965 390 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Cme08g00965 390 Pfam Protein phosphatase 2C 80 325 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02241 Cme-Chr4:29542684 Cme08g00965 Cme-Chr8:6344338 2.65E-149 dispersed
Cme08g00965 Cme-Chr8:6344338 Cme11g00367 Cme-Chr11:3727600 0 dispersed
Cme08g02405 Cme-Chr8:30953251 Cme08g00965 Cme-Chr8:6344338 1.42E-37 dispersed
Cme11g01301 Cme-Chr11:19824272 Cme08g00965 Cme-Chr8:6344338 2.08E-37 dispersed
Cme06g02359 Cme-Chr6:30882718 Cme08g00965 Cme-Chr8:6344338 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00965 K01102 - csv:101219696 738.413