Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00969 ATGGCGGAAAGTTTAGAAGAGGTCTACCTCCATGGCGATCTCGACCTTAAAATCATTGCGGCCGTTCATTTGCCTAACATGGACATTGTATCTGATAATCTCCGTCGTTGCTTCACGGCCTGTGGTACTGTCAATTACTCTGCCATTAAATCCGTCGCAACCAAGTCTCGTTCTGTTGCCGGTGAGGCGAAAGCCCACCATGGCCATGGAAAAATTATCACCAGTGATCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCTCGGACTCGGGTCATAAAAAATTCCCAGAATCCTCATTGGAATGAGCATTTCGTTATCCCTCTTGCACAGAAGATGGCCGAGTTGGAATTTCAGGTGAAAGACGATGATGTCTTTGGAGCTGAAGTTATGGGGACGGTCAAAATCCCTGCTCAGGACATTGCCTCCGGTAAGACAATTAGTGGGTGGTATACGGTGATTGGCTCAAATGGCAAGCCACCAAAGCCCGACACTGCACTTCGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAATCCAATATATCGACACGGCATTGCTGGAGATCCCGAGCATAGGGGTGTGCAGCACACTTATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTACTCCCGCAGATTGAATTGGATGGAGGGAATGTTTATAGACAAGAGAAATGTTGGGAGGATATCTGCTATGCTATATCAGAGGCTCATCATATGATTTATATCGTCGGTTGGTCCGTCTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCGTTACCGCGAGGTGGAGATTTGACTCTTGGTGATCTCCTGAAATACAAATCAGAAGAGGGTGTCAGAGTTCTGATGATGATTTGGGATGACAAGACTTCTCATGATAAGTTCTTCATTAACACGGAAGGATTGATGCAGACGCATGACGAGGAAACCAAAAAATTTTTTAAACATTCTTCTGTGATCTGTGTGCTCTCACCTCGCTATCCAAGCGGCAAGCTAAGCTATGTGAAACAGAAGGTTGTAGGGACTGTCTTCACACACCATCAAAAATGTGTCCTTGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCTTTTCTTGGAGGTCTTGATCTCTGCGATGGTCGTTATGATACACCTGAGCATCGATTGTTTCACGACCTTGACACAGTATTTAAGGACGATTTTCATAATCCTACAATTCCTCCTGGAGCCAAAGCTCCAAGGCAACCATGGCATGATTTGCACTGTCGGATTGATGGGCCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGTTGGAACAAAGCCACAAGATGGACAGAGTTTGGACTACGGTGCAGGAGAATTACTCACTGGCATGATGCTTTAATAAAGATAGAGCGTATTTCGTGGATACTAAGCCCTCACGTAACTCTCTTAGAAGACGGTTCAACAAAAGTTCCCGAAGATGACCCAAAAGTATATGTTTCAAAGGAAGAAGATCCTGAAAATTGGCATGTTCAGATATTTCGATCCATTGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCCGAGTCACAGAACCTTGTTTGTGCCAAAAACCTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATCAGATCAGCACAACATTTTATTTATATCGAAAATCAGTACTTTATTGGATCGTCATATGGATGGCCAGGGTATAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCGAGCAAAATAAGAGCCAAGGAAAGATTTGTTGTATATATTATCATACCAATGTGGCCTGAGGGAGATCCAAACAGCGGTCCCATGCAAGAGATCCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAATTGAAGTCATCAGGGCAACCAGATTTGCACCCTCAAGACTTCCTAAATTTTTACTGCCTTGGAAAACGGGAAGAAATTCCTGAGAATGGGCCAACCACTGATGATCCAACGGCATGTAATTCGCTAAAAAATCGACGGTTTATGATTTACGTGCATGCCAAGGGGATGATAGTAGATGACGAATATGTAATTATTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAGGACACGGAGATAGCCACAGGCGCATATCAACCGCATCATACGTGGGCGAAGAAAAAGAAGCACCCACACGGTCAGATTTACGGATACAGAATGTCGTTGTGGAGTGAGCATCTTGGAATGCTAAATCCATGTTTTGAGGAGCCAGAAACTTTGGAATGTGTCAGAAAAATCAATGGGATTGCTGAGGATAACTGGAACAGATTCGTAGACAATGAATTCCGGACATTGCAAGGCCACCTTCTCAGGTATCCGGTGCTCGTGGACGATGATGGGAAAATCAACCCCCTGCCGGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGTTCTCACTCAGCTGCAATTCCTGATGTTGTGACCACATAG 2574 44.29 MAESLEEVYLHGDLDLKIIAAVHLPNMDIVSDNLRRCFTACGTVNYSAIKSVATKSRSVAGEAKAHHGHGKIITSDPYVTVRVPQATVARTRVIKNSQNPHWNEHFVIPLAQKMAELEFQVKDDDVFGAEVMGTVKIPAQDIASGKTISGWYTVIGSNGKPPKPDTALRIEMKFTSVEENPIYRHGIAGDPEHRGVQHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMMIWDDKTSHDKFFINTEGLMQTHDEETKKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPPGAKAPRQPWHDLHCRIDGPAAYDLLINFEQRWNKATRWTEFGLRCRRITHWHDALIKIERISWILSPHVTLLEDGSTKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRAKERFVVYIIIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSGQPDLHPQDFLNFYCLGKREEIPENGPTTDDPTACNSLKNRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKKKHPHGQIYGYRMSLWSEHLGMLNPCFEEPETLECVRKINGIAEDNWNRFVDNEFRTLQGHLLRYPVLVDDDGKINPLPGHENFPDVGGKIIGSHSAAIPDVVTT 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6372261 6379491 + MELO3C007944.2.1 Cme08g00969 335232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00969 857 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Cme08g00969 857 Pfam Phospholipase D Active site motif 703 729 IPR001736 GO:0003824
Cme08g00969 857 Pfam C2 domain 12 153 IPR000008 -
Cme08g00969 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Cme08g00969 857 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Cme08g00969 857 SUPERFAMILY Phospholipase D/nuclease 553 787 - -
Cme08g00969 857 SMART pld_4 702 729 IPR001736 GO:0003824
Cme08g00969 857 SMART pld_4 357 392 IPR001736 GO:0003824
Cme08g00969 857 PIRSF PLD_plant 1 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cme08g00969 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 175 IPR035892 -
Cme08g00969 857 SUPERFAMILY Phospholipase D/nuclease 198 461 - -
Cme08g00969 857 Gene3D C2 domain 11 183 IPR035892 -
Cme08g00969 857 PANTHER PHOSPHOLIPASE D DELTA 5 856 - -
Cme08g00969 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Cme08g00969 857 Pfam Phospholipase D C terminal 778 846 IPR024632 -
Cme08g00969 857 SMART C2_3c 13 151 IPR000008 -
Cme08g00969 857 CDD C2_plant_PLD 8 175 - -
Cme08g00969 857 Gene3D Endonuclease Chain A 227 466 - -
Cme08g00969 857 Gene3D Endonuclease Chain A 526 752 - -
Cme08g00969 857 PANTHER PHOSPHOLIPASE D 5 856 IPR015679 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00969 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - csv:101217251 1744.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01540 Cme-Chr3:24525324 Cme08g00969 Cme-Chr8:6372261 0 dispersed
Cme08g00969 Cme-Chr8:6372261 Cme11g02535 Cme-Chr11:31792866 0 dispersed
Cme08g00969 Cme-Chr8:6372261 Cme03g01617 Cme-Chr3:25062581 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g02610 . 28 844 Phospholipase D Gene Family (Wang group) AT1G52570 78.4 0.0e+00 1373.6
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT1G52570 74.0 0.0e+00 1299.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT1G52570 63.2 0.0e+00 1101.3
Cme04g01195 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 60.1 1.2e-269 926.0
Cme01g02610 . 33 844 Phospholipase D Gene Family (Wang group) AT3G15730 79.0 0.0e+00 1380.9
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT3G15730 74.0 0.0e+00 1306.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT3G15730 63.8 0.0e+00 1097.8
Cme03g01617 . 1305 2031 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 1.7e-300 1028.5
Cme07g02065 . 72 797 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.4e-288 987.6
Cme01g02610 . 119 844 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.8e-287 984.2
Cme11g02535 . 128 1103 Phospholipase D Gene Family (Wang group) AT2G42010 71.4 0.0e+00 1438.7
Cme06g02664 . 14 851 Phospholipase D Gene Family (Wang group) AT2G42010 68.6 0.0e+00 1243.8
Cme03g01540 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 51.8 1.6e-262 902.9
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.6e-262 902.9
Cme11g02535 . 337 1103 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1260.7
Cme06g02664 . 83 851 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1131.3
Cme08g00969 . 71 849 Phospholipase D Gene Family (Wang group) AT4G00240 54.4 8.2e-253 870.2
Cme03g01540 . 65 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 1.7e-250 862.4
Cme11g02535 . 275 888 Phospholipase D Gene Family (Wang group) AT4G11830 67.0 5.0e-248 854.0
Cme06g02664 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 2.1e-246 848.6
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1146.0
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11840 65.4 0.0e+00 1139.4
Cme08g00969 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.0 2.0e-249 859.0
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11850 68.7 0.0e+00 1211.4
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11850 68.3 0.0e+00 1203.0
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT4G11850 51.3 5.7e-255 877.5
Cme03g01540 . 13 846 Phospholipase D Gene Family (Wang group) AT4G11850 50.2 6.3e-246 847.4
Cme08g00969 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.9 3.6e-300 1027.3
Cme03g01540 . 7 675 Phospholipase D Gene Family (Wang group) AT4G35790 64.1 4.3e-269 924.1
Cme11g02535 . 282 932 Phospholipase D Gene Family (Wang group) AT4G35790 50.9 9.8e-197 683.7
Cme05g01583 . 35 1109 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1349.0
Cme11g02046 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.5 0.0e+00 1327.4
Cme11g02046 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.3 0.0e+00 1459.1
Cme05g01583 . 22 988 Phospholipase D Gene Family (Wang group) AT3G16785 62.1 0.0e+00 1203.0
Cme01g02610 . 33 844 Phospholipase D Gene Family (Wang group) AT3G15730 79.0 0.0e+00 1380.9
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT3G15730 74.0 0.0e+00 1306.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT3G15730 63.8 0.0e+00 1097.8
Cme01g02610 . 28 844 Phospholipase D Gene Family (Wang group) AT1G52570 78.4 0.0e+00 1373.6
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT1G52570 74.0 0.0e+00 1299.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT1G52570 63.2 0.0e+00 1101.3
Cme11g02535 . 128 1103 Phospholipase D Gene Family (Wang group) AT2G42010 71.4 0.0e+00 1438.7
Cme06g02664 . 14 851 Phospholipase D Gene Family (Wang group) AT2G42010 68.6 0.0e+00 1243.8
Cme03g01540 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 51.8 1.6e-262 902.9
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.6e-262 902.9
Cme11g02535 . 337 1103 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1260.7
Cme06g02664 . 83 851 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1131.3
Cme08g00969 . 71 849 Phospholipase D Gene Family (Wang group) AT4G00240 54.4 8.2e-253 870.2
Cme03g01540 . 65 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 1.7e-250 862.4
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11850 68.7 0.0e+00 1211.4
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11850 68.3 0.0e+00 1203.0
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT4G11850 51.3 5.7e-255 877.5
Cme03g01540 . 13 846 Phospholipase D Gene Family (Wang group) AT4G11850 50.2 6.3e-246 847.4
Cme11g02535 . 275 888 Phospholipase D Gene Family (Wang group) AT4G11830 67.0 5.0e-248 854.0
Cme06g02664 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 2.1e-246 848.6
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1146.0
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11840 65.4 0.0e+00 1139.4
Cme08g00969 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.0 2.0e-249 859.0
Cme08g00969 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.9 3.6e-300 1027.3
Cme03g01540 . 7 675 Phospholipase D Gene Family (Wang group) AT4G35790 64.1 4.3e-269 924.1
Cme11g02535 . 282 932 Phospholipase D Gene Family (Wang group) AT4G35790 50.9 9.8e-197 683.7
Cme04g01195 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 60.1 1.2e-269 926.0
Cme03g01617 . 1305 2031 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 1.7e-300 1028.5
Cme07g02065 . 72 797 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.4e-288 987.6
Cme01g02610 . 119 844 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.8e-287 984.2
Cme11g02046 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.3 0.0e+00 1459.1
Cme05g01583 . 22 988 Phospholipase D Gene Family (Wang group) AT3G16785 62.1 0.0e+00 1203.0
Cme05g01583 . 35 1109 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1349.0
Cme11g02046 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.5 0.0e+00 1327.4
Cme01g02610 . 33 844 Phospholipase D Gene Family (Wang group) AT3G15730 79.0 0.0e+00 1380.9
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT3G15730 74.0 0.0e+00 1306.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT3G15730 63.8 0.0e+00 1097.8
Cme01g02610 . 28 844 Phospholipase D Gene Family (Wang group) AT1G52570 78.4 0.0e+00 1373.6
Cme07g02065 . 1 797 Phospholipase D Gene Family (Wang group) AT1G52570 74.0 0.0e+00 1299.6
Cme03g01617 . 1220 2032 Phospholipase D Gene Family (Wang group) AT1G52570 63.2 0.0e+00 1101.3
Cme03g01617 . 1305 2031 Phospholipase D Gene Family (Wang group) AT5G25370 66.8 1.7e-300 1028.5
Cme07g02065 . 72 797 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.4e-288 987.6
Cme01g02610 . 119 844 Phospholipase D Gene Family (Wang group) AT5G25370 62.9 3.8e-287 984.2
Cme04g01195 . 31 761 Phospholipase D Gene Family (Wang group) AT1G55180 60.1 1.2e-269 926.0
Cme11g02535 . 128 1103 Phospholipase D Gene Family (Wang group) AT2G42010 71.4 0.0e+00 1438.7
Cme06g02664 . 14 851 Phospholipase D Gene Family (Wang group) AT2G42010 68.6 0.0e+00 1243.8
Cme03g01540 . 4 846 Phospholipase D Gene Family (Wang group) AT2G42010 51.8 1.6e-262 902.9
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT2G42010 51.9 1.6e-262 902.9
Cme11g02535 . 337 1103 Phospholipase D Gene Family (Wang group) AT4G00240 78.4 0.0e+00 1260.7
Cme06g02664 . 83 851 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1131.3
Cme08g00969 . 71 849 Phospholipase D Gene Family (Wang group) AT4G00240 54.4 8.2e-253 870.2
Cme03g01540 . 65 846 Phospholipase D Gene Family (Wang group) AT4G00240 54.3 1.7e-250 862.4
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11850 68.7 0.0e+00 1211.4
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11850 68.3 0.0e+00 1203.0
Cme08g00969 . 4 849 Phospholipase D Gene Family (Wang group) AT4G11850 51.3 5.7e-255 877.5
Cme03g01540 . 13 846 Phospholipase D Gene Family (Wang group) AT4G11850 50.2 6.3e-246 847.4
Cme11g02535 . 275 888 Phospholipase D Gene Family (Wang group) AT4G11830 67.0 5.0e-248 854.0
Cme06g02664 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.9 2.1e-246 848.6
Cme11g02535 . 257 1103 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1146.0
Cme06g02664 . 7 851 Phospholipase D Gene Family (Wang group) AT4G11840 65.4 0.0e+00 1139.4
Cme08g00969 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 51.0 2.0e-249 859.0
Cme08g00969 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.9 3.6e-300 1027.3
Cme03g01540 . 7 675 Phospholipase D Gene Family (Wang group) AT4G35790 64.1 4.3e-269 924.1
Cme11g02535 . 282 932 Phospholipase D Gene Family (Wang group) AT4G35790 50.9 9.8e-197 683.7
Cme11g02046 . 1 990 Phospholipase D Gene Family (Wang group) AT3G16785 73.3 0.0e+00 1459.1
Cme05g01583 . 22 988 Phospholipase D Gene Family (Wang group) AT3G16785 62.1 0.0e+00 1203.0
Cme05g01583 . 35 1109 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1349.0
Cme11g02046 . 40 1113 Phospholipase D Gene Family (Wang group) AT3G05630 61.5 0.0e+00 1327.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001558 0 7 3 2 2 2 3 2 2 2 2 2 3 2 3 3 2 2 3 2 2 2 2 3 2 2 2 4 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g00969 Cme_Chr08 FPKM 0.468013 0.0 0.0 1.157875 0.0 2.314179 2.912351 26.468456 26.718512 31.302849