Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00969 ATGGCGGAAAGTTTAGAAGAGGTCTACCTCCATGGCGATCTCGACCTTAAAATCATTGCGGCCGTTCATTTGCCTAACATGGACATTGTATCTGATAATCTCCGTCGTTGCTTCACGGCCTGTGGTACTGTCAATTACTCTGCCATTAAATCCGTCGCAACCAAGTCTCGTTCTGTTGCCGGTGAGGCGAAAGCCCACCATGGCCATGGAAAAATTATCACCAGTGATCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCTCGGACTCGGGTCATAAAAAATTCCCAGAATCCTCATTGGAATGAGCATTTCGTTATCCCTCTTGCACAGAAGATGGCCGAGTTGGAATTTCAGGTGAAAGACGATGATGTCTTTGGAGCTGAAGTTATGGGGACGGTCAAAATCCCTGCTCAGGACATTGCCTCCGGTAAGACAATTAGTGGGTGGTATACGGTGATTGGCTCAAATGGCAAGCCACCAAAGCCCGACACTGCACTTCGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAATCCAATATATCGACACGGCATTGCTGGAGATCCCGAGCATAGGGGTGTGCAGCACACTTATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTACTCCCGCAGATTGAATTGGATGGAGGGAATGTTTATAGACAAGAGAAATGTTGGGAGGATATCTGCTATGCTATATCAGAGGCTCATCATATGATTTATATCGTCGGTTGGTCCGTCTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCGTTACCGCGAGGTGGAGATTTGACTCTTGGTGATCTCCTGAAATACAAATCAGAAGAGGGTGTCAGAGTTCTGATGATGATTTGGGATGACAAGACTTCTCATGATAAGTTCTTCATTAACACGGAAGGATTGATGCAGACGCATGACGAGGAAACCAAAAAATTTTTTAAACATTCTTCTGTGATCTGTGTGCTCTCACCTCGCTATCCAAGCGGCAAGCTAAGCTATGTGAAACAGAAGGTTGTAGGGACTGTCTTCACACACCATCAAAAATGTGTCCTTGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCTTTTCTTGGAGGTCTTGATCTCTGCGATGGTCGTTATGATACACCTGAGCATCGATTGTTTCACGACCTTGACACAGTATTTAAGGACGATTTTCATAATCCTACAATTCCTCCTGGAGCCAAAGCTCCAAGGCAACCATGGCATGATTTGCACTGTCGGATTGATGGGCCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGTTGGAACAAAGCCACAAGATGGACAGAGTTTGGACTACGGTGCAGGAGAATTACTCACTGGCATGATGCTTTAATAAAGATAGAGCGTATTTCGTGGATACTAAGCCCTCACGTAACTCTCTTAGAAGACGGTTCAACAAAAGTTCCCGAAGATGACCCAAAAGTATATGTTTCAAAGGAAGAAGATCCTGAAAATTGGCATGTTCAGATATTTCGATCCATTGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCCGAGTCACAGAACCTTGTTTGTGCCAAAAACCTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATCAGATCAGCACAACATTTTATTTATATCGAAAATCAGTACTTTATTGGATCGTCATATGGATGGCCAGGGTATAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCGAGCAAAATAAGAGCCAAGGAAAGATTTGTTGTATATATTATCATACCAATGTGGCCTGAGGGAGATCCAAACAGCGGTCCCATGCAAGAGATCCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAATTGAAGTCATCAGGGCAACCAGATTTGCACCCTCAAGACTTCCTAAATTTTTACTGCCTTGGAAAACGGGAAGAAATTCCTGAGAATGGGCCAACCACTGATGATCCAACGGCATGTAATTCGCTAAAAAATCGACGGTTTATGATTTACGTGCATGCCAAGGGGATGATAGTAGATGACGAATATGTAATTATTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAGGACACGGAGATAGCCACAGGCGCATATCAACCGCATCATACGTGGGCGAAGAAAAAGAAGCACCCACACGGTCAGATTTACGGATACAGAATGTCGTTGTGGAGTGAGCATCTTGGAATGCTAAATCCATGTTTTGAGGAGCCAGAAACTTTGGAATGTGTCAGAAAAATCAATGGGATTGCTGAGGATAACTGGAACAGATTCGTAGACAATGAATTCCGGACATTGCAAGGCCACCTTCTCAGGTATCCGGTGCTCGTGGACGATGATGGGAAAATCAACCCCCTGCCGGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGTTCTCACTCAGCTGCAATTCCTGATGTTGTGACCACATAG 2574 44.29 MAESLEEVYLHGDLDLKIIAAVHLPNMDIVSDNLRRCFTACGTVNYSAIKSVATKSRSVAGEAKAHHGHGKIITSDPYVTVRVPQATVARTRVIKNSQNPHWNEHFVIPLAQKMAELEFQVKDDDVFGAEVMGTVKIPAQDIASGKTISGWYTVIGSNGKPPKPDTALRIEMKFTSVEENPIYRHGIAGDPEHRGVQHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMMIWDDKTSHDKFFINTEGLMQTHDEETKKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPPGAKAPRQPWHDLHCRIDGPAAYDLLINFEQRWNKATRWTEFGLRCRRITHWHDALIKIERISWILSPHVTLLEDGSTKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRAKERFVVYIIIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSGQPDLHPQDFLNFYCLGKREEIPENGPTTDDPTACNSLKNRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKKKHPHGQIYGYRMSLWSEHLGMLNPCFEEPETLECVRKINGIAEDNWNRFVDNEFRTLQGHLLRYPVLVDDDGKINPLPGHENFPDVGGKIIGSHSAAIPDVVTT 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6372261 6379491 + MELO3C007944.2.1 Cme08g00969 335232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00969 857 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Cme08g00969 857 Pfam Phospholipase D Active site motif 703 729 IPR001736 GO:0003824
Cme08g00969 857 Pfam C2 domain 12 153 IPR000008 -
Cme08g00969 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Cme08g00969 857 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Cme08g00969 857 SUPERFAMILY Phospholipase D/nuclease 553 787 - -
Cme08g00969 857 SMART pld_4 702 729 IPR001736 GO:0003824
Cme08g00969 857 SMART pld_4 357 392 IPR001736 GO:0003824
Cme08g00969 857 PIRSF PLD_plant 1 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cme08g00969 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 175 IPR035892 -
Cme08g00969 857 SUPERFAMILY Phospholipase D/nuclease 198 461 - -
Cme08g00969 857 Gene3D C2 domain 11 183 IPR035892 -
Cme08g00969 857 PANTHER PHOSPHOLIPASE D DELTA 5 856 - -
Cme08g00969 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Cme08g00969 857 Pfam Phospholipase D C terminal 778 846 IPR024632 -
Cme08g00969 857 SMART C2_3c 13 151 IPR000008 -
Cme08g00969 857 CDD C2_plant_PLD 8 175 - -
Cme08g00969 857 Gene3D Endonuclease Chain A 227 466 - -
Cme08g00969 857 Gene3D Endonuclease Chain A 526 752 - -
Cme08g00969 857 PANTHER PHOSPHOLIPASE D 5 856 IPR015679 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01540 Cme-Chr3:24525324 Cme08g00969 Cme-Chr8:6372261 0 dispersed
Cme08g00969 Cme-Chr8:6372261 Cme11g02535 Cme-Chr11:31792866 0 dispersed
Cme08g00969 Cme-Chr8:6372261 Cme03g01617 Cme-Chr3:25062581 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00969 K01115 - csv:101217251 1744.94