Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00972 ATGGCAGCTCACAGCAGCCACCATGGTCGGTCTACAAACCGTTCCCGGGCTGGTCATTCTCTATGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCAGCAGCGCTTGTCTGTTGGGTTTTGTGGGCACATCGTATGGCATTCGGCAAACGTTTGTTCGGGATCGTTGTAAGCCCGGCCTAGCTCTGTCTGAGACCTACCTTCTTTCACAGTCTACACAAGGCTGTTTTCCGATGGCTGACTACGTGTTTTTCCAGTTTGCTTTCGCTGCCATTACTGTAGTGTTGCTTGCCGGGTCCTTGCTGGGAAGGATGAATTTTGGAGCATGGATGCTTTTTGTTCCAATGTGGCTTACTCTTTGTTATACTGTGGGGGCATTTTGTATATGGGGAGATGGGTTTATTCAGAAGTACCTAATTGACTATGCCGGCGGCTACGTCATTCATCTTTCTTCTGGGGTTGCTGGATTCACTGCTGCTTACTGGGTCGGGCCACGACACTCTCATGACAGGCAGAACTTCCCACCAAACAACATACTGCACATGGTTGGAGGTGCAGGGTTTCTTTGGCTGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCGAGTCGTATTACATCACTGGCCATTTTGAACACACATGTTTGCACCGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATCATCACTGGCCTTGTTTGCATCACTCCGGGGGCAGGGCTTGTGGACACTATCGCAGCCGTGGTGATGGGTGTTCTTGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCATAGGAGGTTGGCATTCCTTCAGTGTGTTGACGATACTCTGGGCGTCTTCCACACACATGCTGTAGCTGGTTCCATGGGGGGACTCCTCACAGGCTTCTTTGCCAAACCCAGCCTTCTGAAAATGTTGTATCCAGATTCCCTATACGGACCAGGCTTCCTGTATGCCATCTCTGATAAAAAGCTCAAAGACGGCCTCAAACAAATCGGCATCCAGTTCGCAGGAGCAGTGTTTATTACCCTCTGGAATGCCATATTTACCAGCATTATATGTTACCTGATTAGCCATATTGTTAACTTAAGGATGAAAGAAGAGGACCTGGAGATTGGTGATGATGCAGCTCATGGAGAAGAACCCTACGCGTTGTGGGGTGATGGTGAAAAGATGCCATCTTCATTTCGTCTTCCACACACACCTAGGTTTCCTTCATTATGCAGGTGGGATTAG 1323 48.83 MAAHSSHHGRSTNRSRAGHSLWQHGEEKMGCQLCLHGPLWLCSSACLLGFVGTSYGIRQTFVRDRCKPGLALSETYLLSQSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTLCYTVGAFCIWGDGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSHDRQNFPPNNILHMVGGAGFLWLGWTGFNGGAPFAASRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDTIAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLKMLYPDSLYGPGFLYAISDKKLKDGLKQIGIQFAGAVFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6390240 6392030 - MELO3C007948.2.1 Cme08g00972 335235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00972 440 PANTHER AMMONIUM TRANSPORTER 66 438 - -
Cme08g00972 440 PANTHER AMMONIUM TRANSPORTER MEP2 66 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cme08g00972 440 Pfam Ammonium Transporter Family 69 412 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cme08g00972 440 ProSitePatterns Ammonium transporters signature. 150 175 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cme08g00972 440 PRINTS Rhesus blood group protein signature 95 111 IPR002229 GO:0005887
Cme08g00972 440 PRINTS Rhesus blood group protein signature 275 293 IPR002229 GO:0005887
Cme08g00972 440 PRINTS Rhesus blood group protein signature 189 207 IPR002229 GO:0005887
Cme08g00972 440 PRINTS Rhesus blood group protein signature 220 242 IPR002229 GO:0005887
Cme08g00972 440 Gene3D Ammonium transporter AmtB like domains 40 415 IPR029020 -
Cme08g00972 440 SUPERFAMILY Ammonium transporter 80 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02747 Cme-Chr4:32753758 Cme08g00972 Cme-Chr8:6390240 4.57E-140 dispersed
Cme06g00438 Cme-Chr6:2781414 Cme08g00972 Cme-Chr8:6390240 3.52E-14 dispersed
Cme08g00972 Cme-Chr8:6390240 Cme04g00939 Cme-Chr4:12629376 3.48E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00972 K03320 - csv:101218977 763.451