Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00990 ATGTTGAAATGTGGCCCTGTTTCTGACCTTAGAAAGCAAGAGATTTGCGAGAAGAAGCAGGTTGATCCATTCCATAGACCCATTACAAGGAAATTTGCTGCTCAAATTGCTAGTAGTCAACAGCTTCATCATAATCCTCAGGAAAATAATAAGCCTAACTCATTTCTTACAAATTCAAATGCATTTGGACATTCCATATTTGTAGACGAGGACTGCAAAGCACTAGAAAATGACCATCCAGTCCCCATGTTCTTGGAGAAATCGGAACCATTGTTGCCTCAGGAAGCAAGCCAAATGGAGGAGGTTGAAATGGAGGATATAGCAGAGGAGGAAGATCCATTAATCGACATCGACATTGTTGATTCCGATAACCCGCTTGCCGTTGTTGAGTACGTGGACGATCTCTACGCTCACTACAGAAAAATTGAGAATTCAAGCTGTGTTCCCCCAAATTACATGACCAAACAAATTGACATTAATGAGAAGATGAGAGCTATTCTAATCGATTGGCTTATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACATTGTTTCTCACAGTGAATCTCATAGACAGATTTTTGGCACAAAAAACCGTAGTGAGAAAGAAGCTTCAGCTTGTTGGTTTGGTTTCTATGCTGTTAGCTTGCAAATATGAAGAAGTTTCTGTTCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAAATGGAGACAGTAATGCTCAACTGTTTGCAGTTTAACATGTCAGTTCCCACACCCTTTGTTTTCCTCCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGCTTCAGCTAATGGCATTCTTCTTAATCGAACTCTCGCTCGTCGAGTATGAAATGCTGAGGTTCCCACCCTCTCTGCTAGCGGCAGCGGCAATTTACACAGCTCAATGTACTCTCACCAGAGTCGATGGTGGTTGGAGCCGAACCTGCGAGTGGCATTCCAGCTACTCAGAAGATCAGCTCCTAGAATGCTCGAGACTAATGGTGGGGTTCCATCAAAATGCGGCAACCGGGAAGCTCACCGGAGTCCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1167 42.25 MLKCGPVSDLRKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHNPQENNKPNSFLTNSNAFGHSIFVDEDCKALENDHPVPMFLEKSEPLLPQEASQMEEVEMEDIAEEEDPLIDIDIVDSDNPLAVVEYVDDLYAHYRKIENSSCVPPNYMTKQIDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLAQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETVMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLQLMAFFLIELSLVEYEMLRFPPSLLAAAAIYTAQCTLTRVDGGWSRTCEWHSSYSEDQLLECSRLMVGFHQNAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6469717 6472209 - MELO3C007970.2.1 Cme08g00990 335253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00990 388 Gene3D - 148 260 - -
Cme08g00990 388 PANTHER CYCLINS 35 383 IPR039361 -
Cme08g00990 388 SMART cyclin_7 266 349 IPR013763 -
Cme08g00990 388 SMART cyclin_7 169 253 IPR013763 -
Cme08g00990 388 CDD CYCLIN 163 252 IPR013763 -
Cme08g00990 388 ProSitePatterns Cyclins signature. 164 195 IPR006671 -
Cme08g00990 388 SUPERFAMILY Cyclin-like 261 380 IPR036915 -
Cme08g00990 388 Gene3D - 134 375 - -
Cme08g00990 388 Pfam Cyclin, C-terminal domain 262 378 IPR004367 -
Cme08g00990 388 SMART Cyclin_C_2 262 380 IPR004367 -
Cme08g00990 388 Pfam Cyclin, N-terminal domain 135 260 IPR006671 -
Cme08g00990 388 PIRSF Cyclin_A_B_D_E 6 388 IPR039361 -
Cme08g00990 388 PANTHER CYCLIN-B2-1 35 383 - -
Cme08g00990 388 SUPERFAMILY Cyclin-like 123 259 IPR036915 -
Cme08g00990 388 CDD CYCLIN 260 348 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00058 Cme-Chr7:374287 Cme08g00990 Cme-Chr8:6469717 3.64E-166 dispersed
Cme07g00308 Cme-Chr7:1981391 Cme08g00990 Cme-Chr8:6469717 2.23E-50 dispersed
Cme08g00990 Cme-Chr8:6469717 Cme08g01425 Cme-Chr8:12648898 2.96E-83 dispersed
Cme08g00990 Cme-Chr8:6469717 Cme04g00381 Cme-Chr4:3058212 1.37E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00990 K21777 - csv:101216622 732.25