Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g00998 ATGCAGTTCACTATGAGGATTGTTTGCATTCTAGTATTGATACTTCTCTTCAGTGGGAGTTCCTCATTTGGAGACAGCGCAAATGTATCTCCGAGACCTGAAGTTGTCAACATTGGGGCTTTATTCTCTTTCCGTTCTATGATAGGCAAAGTTGGAAAAATTGCCGTAGAAGCTGCCATCGAGGATGTAAATTCTGATCCATCCATTCTGGGGGTGACGAAACTGAACCTCAGTTTACATGATACCAATTACAGTGGATTTTTGGGCATCATTGAATCCTTGCGATTCATGGAGACCAAGACTATGGCCATAATTGGCCCCCAAAATTCTGTAACTGCTCATGTCATATCTCATATTGCAAATGAGGTCCAAGTCCCTCTATTGTCATTTTCAGCCACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTTGACTACTTCCAATGGAAAGAGGTGATTGCCATCTTTGTTGATGACGATCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAATGAGAGACGATGCAAGATCTCATTAAAAGTACCATTGAAGCCTGATGCTAGTCGAGATGAGGTCACTGATGCGCTTGTTAAGGTGGCTTTAACTCAGTCTCGAATACTTGTTATTCACACTTATGAGACCACAGGTATGGTTGTGCTCAATGTGGCTCAATATCTTGGATTGACAGGGCCTGGGTACGTTTGGATAGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCTCCTCTTCCTTCTGCTTCTATGGAAAATATTCAAGGACTTGTTGCTTTACGTCTTTATACACCAGATTCTGCACTCAAAAGGAATTTTGTTTCAAGGTGGACCAATTTGACTGCTGGAAAGTCATCAAGTGGTTCGTTCGGATTGAGTACTTACGGATTATATGCTTATGATACTGTTTGGATGCTTGCTCATGCAATAAATGCATTTCTTAATGAAGGTGGTAATCTTTCATTTTCAAAACTTTCGAAGTTAACTGGGACTGATGTTAGATATTTGAATCTCAACTCTATGAGCATCTTCAATGGTGGGAAGACACTACTTGACAAAATTTTAGAAGTCAATTTTACTGGAATAACAGGTTCAGTTGGGTTCACTCCAGAGAGGGACTTAATTCATCCTGCATTTGAAGTGATCAATATAATCGGCACAGGGGAAAGAAAAATTGGTTATTGGTCTAACTATTCTGGCCTGTCAATTGTGCCTCCAGAAACCCTTTACTCGAAACCACCTAACCGAACCAGTTCAAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAACACAGAAGCCTCGTGGTTGGGCATTTCCAAACAGTGGAAGACACTTAAGAATTGGAGTTCCGAGACGAGTCAGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCACTGGCTACTGCATCGATGTCTTCACTGCAGCAATCAATTTGTTGCCTTATGCAGTCCCCTATAAGTTAATTCCTTTTGGGGATGGCCTTACTAATCCTAGTGAAACTGAACTTATTCGACTAATCACAACTGGGGTCTATGACGGAGCGATTGGGGACATTGCAATCATCACAAACCGAACCAGGATGGCTGATTTTACACAACCATACGTAGAGTCTGGCCTAGTAGTTGTAGCCCCAGTGAAGAAGTTGAATTCTAGTGCTTGGGCCTTTTTACGACCGTTCACTCCGAAGATGTGGTGTGTTACTGCTGCTTCTTTTCTTGTAATAGGAGCAGTTGTTTGGATTTTAGAGCATAGGATAAATGATGATTTTCGTGGCCCTCCAAAGAAACAAGTTATTACCATTTTATGGTTCAGCTTTTCAACTCTATTCTTCTCTCACCGGGAAAATACAGTCAGTGCCCTTGGTCGCCTCGTGCTGATCATATGGTTATTTGTTGTTCTAATTATCAATTCAAGCTATACTGCAAGTTTGACTTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTGAAAGGGATTGAAACTTTGATTTCAAACAATGACCCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATTGAGGAACTTGGCATTCATGAGTCGAGACTAGTTCCACTCATCTCAGCAGAACACTATGTTAAAGCCTTGAATGATGGGCCAACAAATAATGGTGTTGCTGCTATTGTCGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGTGAGTACAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCCTCGCGACTCTCCATTAGCAGTTGACATGTCCACAGCTATTTTAAGACTGTCTGAAAATGGAGATCTTCAAAGGATCCATGACAAATGGTTAATGAAAAGTGCCTGCACATCACAAGCTTCAAAAATTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGACTTTTTCTAATATGTGGATGTGCCTGTTTGCTCGCTCTATCAATATACCTCTATCAAATGGTGCGCCAATATAGTGAACATTACGCTGAAGAACTTGGGTCTTCTGAGCAAACCTCTAGATCTGCAAGCCTACAAAGATTCCTTTCTTTTGCAGATGAAAAAGAAGAAGTCTTCAAAAGTCAATCCAAGCGAAGACGAATGCAAGAGGATTCAATTAGAAGCGTGAATGAAGAAAATTCAACAGGCAGTGTAAGAAAAGTTGGCCATGGTTATGCCGATGGCAATATGCATGATTCCTAG 2817 41.32 MQFTMRIVCILVLILLFSGSSSFGDSANVSPRPEVVNIGALFSFRSMIGKVGKIAVEAAIEDVNSDPSILGVTKLNLSLHDTNYSGFLGIIESLRFMETKTMAIIGPQNSVTAHVISHIANEVQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWKEVIAIFVDDDHGRNGIAALGDQLNERRCKISLKVPLKPDASRDEVTDALVKVALTQSRILVIHTYETTGMVVLNVAQYLGLTGPGYVWIATNWLSLLLDTNSPLPSASMENIQGLVALRLYTPDSALKRNFVSRWTNLTAGKSSSGSFGLSTYGLYAYDTVWMLAHAINAFLNEGGNLSFSKLSKLTGTDVRYLNLNSMSIFNGGKTLLDKILEVNFTGITGSVGFTPERDLIHPAFEVINIIGTGERKIGYWSNYSGLSIVPPETLYSKPPNRTSSNQKLYDVVWPGQATQKPRGWAFPNSGRHLRIGVPRRVSYQEFVSQVEGTDMFTGYCIDVFTAAINLLPYAVPYKLIPFGDGLTNPSETELIRLITTGVYDGAIGDIAIITNRTRMADFTQPYVESGLVVVAPVKKLNSSAWAFLRPFTPKMWCVTAASFLVIGAVVWILEHRINDDFRGPPKKQVITILWFSFSTLFFSHRENTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLISNNDPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPTNNGVAAIVDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFPRDSPLAVDMSTAILRLSENGDLQRIHDKWLMKSACTSQASKIEVDRLQLNSFWGLFLICGCACLLALSIYLYQMVRQYSEHYAEELGSSEQTSRSASLQRFLSFADEKEEVFKSQSKRRRMQEDSIRSVNEENSTGSVRKVGHGYADGNMHDS 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6507879 6511825 + MELO3C007977.2.1 Cme08g00998 335261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g00998 938 Gene3D - 54 403 - -
Cme08g00998 938 SUPERFAMILY Periplasmic binding protein-like I 31 466 IPR028082 -
Cme08g00998 938 MobiDBLite consensus disorder prediction 893 912 - -
Cme08g00998 938 Gene3D - 781 814 - -
Cme08g00998 938 Gene3D - 151 428 - -
Cme08g00998 938 Pfam Receptor family ligand binding region 54 412 IPR001828 -
Cme08g00998 938 Pfam Bacterial extracellular solute-binding proteins, family 3 498 815 IPR001638 -
Cme08g00998 938 CDD GluR_Plant 475 815 - -
Cme08g00998 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 49 65 - -
Cme08g00998 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 109 137 - -
Cme08g00998 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 326 338 - -
Cme08g00998 938 PANTHER GLUTAMATE RECEPTOR 3.6 17 925 - -
Cme08g00998 938 Gene3D - 746 780 - -
Cme08g00998 938 MobiDBLite consensus disorder prediction 893 938 - -
Cme08g00998 938 SMART GluR_14 476 817 IPR001320 GO:0015276|GO:0016020
Cme08g00998 938 Pfam Ligand-gated ion channel 816 848 IPR001320 GO:0015276|GO:0016020
Cme08g00998 938 Gene3D - 467 585 - -
Cme08g00998 938 CDD PBP1_GABAb_receptor_plant 37 432 IPR044440 -
Cme08g00998 938 SUPERFAMILY Periplasmic binding protein-like II 453 818 - -
Cme08g00998 938 Gene3D - 586 712 - -
Cme08g00998 938 PIRSF IGluLR_plant 2 935 IPR017103 -
Cme08g00998 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 925 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01140 Cme-Chr1:14678459 Cme08g00998 Cme-Chr8:6507879 0 dispersed
Cme04g01184 Cme-Chr4:16178560 Cme08g00998 Cme-Chr8:6507879 3.76E-143 dispersed
Cme07g00040 Cme-Chr7:249588 Cme08g00998 Cme-Chr8:6507879 0 dispersed
Cme08g00998 Cme-Chr8:6507879 Cme11g00789 Cme-Chr11:10085949 0 dispersed
Cme08g00998 Cme-Chr8:6507879 Cme11g00787 Cme-Chr11:10028159 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g00998 K05387 - csv:101213408 1733.38