Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01008 ATGGACCCCACAAATGGAAATAATGCTACCAGCAAAAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTCGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATATCACGTCAAAAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCGTCTGATGGAAAAAAGACCGACAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGCTCGTCGGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTACATGAACAATTGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACTTGAAGAAGATAATCGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGCTGCCTCTGCCTTTACAGCTCCTGCTTCTGGTGATAACTGCCCAGAAGCTGATAAAAACGACCCACCGACACCCGCGTCCACATCCGAGTTTCCTCGCCAAGAGAAAGTATCAAAGGAACGTGCCCAAGGCAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCATCACGAACCGTTGACGCCCGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGTGCAAGGCCAGTGAAGAAGCAAAGACAGGACATGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTGGAGTCTAGTTTAAACTCCACTCACAAGGAATGA 813 46.25 MDPTNGNNATSKNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKTDKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPAASAFTAPASGDNCPEADKNDPPTPASTSEFPRQEKVSKERAQGKSVSIDDSFSSHHEPLTPDSGCHSSPSESARPVKKQRQDMDGAFAKSEMILAHQILESSLNSTHKE 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6568041 6571813 - MELO3C007988.2.1 Cme08g01008 335271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01008 270 MobiDBLite consensus disorder prediction 1 20 - -
Cme08g01008 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 1 269 - -
Cme08g01008 270 MobiDBLite consensus disorder prediction 166 250 - -
Cme08g01008 270 MobiDBLite consensus disorder prediction 79 95 - -
Cme08g01008 270 MobiDBLite consensus disorder prediction 78 101 - -
Cme08g01008 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 269 IPR044848 GO:0003700
Cme08g01008 270 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Cme08g01008 270 MobiDBLite consensus disorder prediction 207 233 - -
Cme08g01008 270 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Cme08g01008 270 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
Cme08g01008 270 Coils Coil 108 128 - -
Cme08g01008 270 Gene3D - 18 77 - -
Cme08g01008 270 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Cme08g01008 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01008 - - - csv:101215173 472.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02174 Cme-Chr4:28969920 Cme08g01008 Cme-Chr8:6568041 4.88E-75 dispersed
Cme08g01008 Cme-Chr8:6568041 Cme08g01857 Cme-Chr8:22407507 4.32E-51 dispersed
Cme08g01008 Cme-Chr8:6568041 Cme08g01009 Cme-Chr8:6573492 4.21E-35 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41833 PF00249 Myb_DNA-binding 8.60E-08 CL0123 Cme TF