Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g01008 | ATGGACCCCACAAATGGAAATAATGCTACCAGCAAAAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTCGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATATCACGTCAAAAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCGTCTGATGGAAAAAAGACCGACAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGCTCGTCGGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTACATGAACAATTGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACTTGAAGAAGATAATCGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGCTGCCTCTGCCTTTACAGCTCCTGCTTCTGGTGATAACTGCCCAGAAGCTGATAAAAACGACCCACCGACACCCGCGTCCACATCCGAGTTTCCTCGCCAAGAGAAAGTATCAAAGGAACGTGCCCAAGGCAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCATCACGAACCGTTGACGCCCGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGTGCAAGGCCAGTGAAGAAGCAAAGACAGGACATGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTGGAGTCTAGTTTAAACTCCACTCACAAGGAATGA | 813 | 46.25 | MDPTNGNNATSKNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKTDKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPAASAFTAPASGDNCPEADKNDPPTPASTSEFPRQEKVSKERAQGKSVSIDDSFSSHHEPLTPDSGCHSSPSESARPVKKQRQDMDGAFAKSEMILAHQILESSLNSTHKE | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6568041 | 6571813 | - | MELO3C007988.2.1 | Cme08g01008 | 335271 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g01008 | 270 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cme08g01008 | 270 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL7 | 1 | 269 | - | - | |
Cme08g01008 | 270 | MobiDBLite | consensus disorder prediction | 166 | 250 | - | - | |
Cme08g01008 | 270 | MobiDBLite | consensus disorder prediction | 79 | 95 | - | - | |
Cme08g01008 | 270 | MobiDBLite | consensus disorder prediction | 78 | 101 | - | - | |
Cme08g01008 | 270 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE | 1 | 269 | IPR044848 | GO:0003700 | |
Cme08g01008 | 270 | Pfam | Myb-like DNA-binding domain | 22 | 72 | IPR001005 | - | |
Cme08g01008 | 270 | MobiDBLite | consensus disorder prediction | 207 | 233 | - | - | |
Cme08g01008 | 270 | SUPERFAMILY | Homeodomain-like | 18 | 73 | IPR009057 | - | |
Cme08g01008 | 270 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 19 | 74 | IPR006447 | GO:0003677 | |
Cme08g01008 | 270 | Coils | Coil | 108 | 128 | - | - | |
Cme08g01008 | 270 | Gene3D | - | 18 | 77 | - | - | |
Cme08g01008 | 270 | Pfam | MYB-CC type transfactor, LHEQLE motif | 105 | 151 | IPR025756 | - | |
Cme08g01008 | 270 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 16 | 76 | IPR017930 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02174 | Cme-Chr4:28969920 | Cme08g01008 | Cme-Chr8:6568041 | 4.88E-75 | dispersed | |
Cme08g01008 | Cme-Chr8:6568041 | Cme08g01857 | Cme-Chr8:22407507 | 4.32E-51 | dispersed | |
Cme08g01008 | Cme-Chr8:6568041 | Cme08g01009 | Cme-Chr8:6573492 | 4.21E-35 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41833 | PF00249 | Myb_DNA-binding | 8.60E-08 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g01008 | - | - | csv:101215173 | 472.626 |