Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01008 ATGGACCCCACAAATGGAAATAATGCTACCAGCAAAAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTCGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATATCACGTCAAAAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCGTCTGATGGAAAAAAGACCGACAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGCTCGTCGGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTACATGAACAATTGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACTTGAAGAAGATAATCGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGCTGCCTCTGCCTTTACAGCTCCTGCTTCTGGTGATAACTGCCCAGAAGCTGATAAAAACGACCCACCGACACCCGCGTCCACATCCGAGTTTCCTCGCCAAGAGAAAGTATCAAAGGAACGTGCCCAAGGCAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCATCACGAACCGTTGACGCCCGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGTGCAAGGCCAGTGAAGAAGCAAAGACAGGACATGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTGGAGTCTAGTTTAAACTCCACTCACAAGGAATGA 813 46.25 MDPTNGNNATSKNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKTDKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPAASAFTAPASGDNCPEADKNDPPTPASTSEFPRQEKVSKERAQGKSVSIDDSFSSHHEPLTPDSGCHSSPSESARPVKKQRQDMDGAFAKSEMILAHQILESSLNSTHKE 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6568041 6571813 - MELO3C007988.2.1 Cme08g01008 335271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01008 270 MobiDBLite consensus disorder prediction 1 20 - -
Cme08g01008 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 1 269 - -
Cme08g01008 270 MobiDBLite consensus disorder prediction 166 250 - -
Cme08g01008 270 MobiDBLite consensus disorder prediction 79 95 - -
Cme08g01008 270 MobiDBLite consensus disorder prediction 78 101 - -
Cme08g01008 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 269 IPR044848 GO:0003700
Cme08g01008 270 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Cme08g01008 270 MobiDBLite consensus disorder prediction 207 233 - -
Cme08g01008 270 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Cme08g01008 270 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
Cme08g01008 270 Coils Coil 108 128 - -
Cme08g01008 270 Gene3D - 18 77 - -
Cme08g01008 270 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Cme08g01008 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02174 Cme-Chr4:28969920 Cme08g01008 Cme-Chr8:6568041 4.88E-75 dispersed
Cme08g01008 Cme-Chr8:6568041 Cme08g01857 Cme-Chr8:22407507 4.32E-51 dispersed
Cme08g01008 Cme-Chr8:6568041 Cme08g01009 Cme-Chr8:6573492 4.21E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41833 PF00249 Myb_DNA-binding 8.60E-08 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01008 - - csv:101215173 472.626