Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01009 ATGTTTCCCAGACTTGTTAATCCCGACGGTGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCTGACCTCACCCACACTCACCGTGGAGATCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGATGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTTACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCTGGGAAGGATATGGGTGAGGCTTCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTGCAAAGCAAATTGCATCTGCAAGTCGAGGCAGAGAAGCACCTACAAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTTATTGTAGGTGCAGTTTCGGACTCGGACAGCAAGAAGTCCGAAGGACAGGATCGTAAGAGCCCAAGAAGTACTTCCATCGACCCACTTGGTTTCTACACTACGCAATCACAAGAGATGGAAAGAGTGAATGGCACAGAAGAAGTGCAGGCTAATCTTCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCAAACGAGAGTCCCGGGGGATTGGCTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGAGTGATGCTAAGGAAGGAATACAAAATGCTAACATCATCCAAGTTAACCATCACGGCGTGTCCGGATGCGACATGTGGGGATAA 942 46.6 MFPRLVNPDGDIQIHGPRGSVASDLTHTHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYLAMLERACKMLADQFIVGAVSDSDSKKSEGQDRKSPRSTSIDPLGFYTTQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPVASKKNMVNLDSATASLIWSDAKEGIQNANIIQVNHHGVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6573492 6579196 - MELO3C007989.2.1 Cme08g01009 335272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01009 313 Gene3D - 41 99 - -
Cme08g01009 313 MobiDBLite consensus disorder prediction 1 20 - -
Cme08g01009 313 MobiDBLite consensus disorder prediction 193 215 - -
Cme08g01009 313 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 18 307 - -
Cme08g01009 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Cme08g01009 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Cme08g01009 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cme08g01009 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 307 IPR044848 GO:0003700
Cme08g01009 313 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01493 Cme-Chr1:19617312 Cme08g01009 Cme-Chr8:6573492 1.41E-50 dispersed
Cme08g01009 Cme-Chr8:6573492 Cme11g01645 Cme-Chr11:24315395 3.55E-47 dispersed
Cme08g01008 Cme-Chr8:6568041 Cme08g01009 Cme-Chr8:6573492 4.21E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41834 PF00249 Myb_DNA-binding 8.40E-06 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01009 - - csv:105435941 617.461