Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g01009 | ATGTTTCCCAGACTTGTTAATCCCGACGGTGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCTGACCTCACCCACACTCACCGTGGAGATCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGATGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTTACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCTGGGAAGGATATGGGTGAGGCTTCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTGCAAAGCAAATTGCATCTGCAAGTCGAGGCAGAGAAGCACCTACAAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTTATTGTAGGTGCAGTTTCGGACTCGGACAGCAAGAAGTCCGAAGGACAGGATCGTAAGAGCCCAAGAAGTACTTCCATCGACCCACTTGGTTTCTACACTACGCAATCACAAGAGATGGAAAGAGTGAATGGCACAGAAGAAGTGCAGGCTAATCTTCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCAAACGAGAGTCCCGGGGGATTGGCTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGAGTGATGCTAAGGAAGGAATACAAAATGCTAACATCATCCAAGTTAACCATCACGGCGTGTCCGGATGCGACATGTGGGGATAA | 942 | 46.6 | MFPRLVNPDGDIQIHGPRGSVASDLTHTHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYLAMLERACKMLADQFIVGAVSDSDSKKSEGQDRKSPRSTSIDPLGFYTTQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPVASKKNMVNLDSATASLIWSDAKEGIQNANIIQVNHHGVSGCDMWG | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6573492 | 6579196 | - | MELO3C007989.2.1 | Cme08g01009 | 335272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g01009 | 313 | Gene3D | - | 41 | 99 | - | - | |
Cme08g01009 | 313 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cme08g01009 | 313 | MobiDBLite | consensus disorder prediction | 193 | 215 | - | - | |
Cme08g01009 | 313 | PANTHER | MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN | 18 | 307 | - | - | |
Cme08g01009 | 313 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 42 | 97 | IPR006447 | GO:0003677 | |
Cme08g01009 | 313 | Pfam | MYB-CC type transfactor, LHEQLE motif | 137 | 182 | IPR025756 | - | |
Cme08g01009 | 313 | SUPERFAMILY | Homeodomain-like | 42 | 98 | IPR009057 | - | |
Cme08g01009 | 313 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 18 | 307 | IPR044848 | GO:0003700 | |
Cme08g01009 | 313 | Pfam | Myb-like DNA-binding domain | 45 | 95 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01493 | Cme-Chr1:19617312 | Cme08g01009 | Cme-Chr8:6573492 | 1.41E-50 | dispersed | |
Cme08g01009 | Cme-Chr8:6573492 | Cme11g01645 | Cme-Chr11:24315395 | 3.55E-47 | dispersed | |
Cme08g01008 | Cme-Chr8:6568041 | Cme08g01009 | Cme-Chr8:6573492 | 4.21E-35 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41834 | PF00249 | Myb_DNA-binding | 8.40E-06 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g01009 | - | - | csv:105435941 | 617.461 |