Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01025 ATGGCGTCAATTGCTGGTTCCAAAGCTTCGTCAAATCAGCCACAACAACCGGCTAATGGTGAAATGGCTAATGGAAAGGATACCGGGTCCTTGCCTCCGCAGATTTCCAAGTTAAGCATTTCTGACCAGTCTAAATCAGTGAAGAGTATTTCAAAGAAGGATGTGGAATTATCTTCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACCGAAAAATTTAATTTCAGCGTACCCTCTCCTGGTCTGAAACAAACACCAACTGAAGTAGATTCCCCTATCAATGAAGCTAAATGCTCACCTGGAAGCTCGCTTGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGTAAAGTAAGTGATGGGACTAGTTGTCTTGCCAAGACGAGTGGAAGTACGAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTAGAGGGAGCACAAGCAGTGATATAAGCGACGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAAGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCTATGGGATTAGGACATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTCGCAATGAAGGTTATGGATAAAAATACTTTAGCGAGTCGTAAGAAGTTACTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTCGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACAGAAAAATTCTCGTGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCATACCCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCCGAGCAGGCAGTAAAATTCTATGTAGCGGAGGTTCTTCTTGCACTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTCCTTGTGAGAGAAGACGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAACCCGACTCTGGTCAAAAATCTCTCGGCAGAGTCGGAAGCTTTGAGAAAGAATACAGGTTACTGTGTGCAGCCTGCTTGCATTGAGCCGTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGCAAGTCAAAGAAGGAACGAAAACCCAAAATTGATTTGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATTGCAGAACCAACCGATGCCCGATCCATGTCTTTTGTAGGAACTCATGAGTACTTGGCACCTGAGATAATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTATATGAGCTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACATTATTCAACATTGTTGGTCAGCCTCTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCAAAAGATCTGATAAGGGGATTGCTAGTGAAGGAACCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATCAAGCAGCATCCTTTCTTCGAAGGTGTAAATTGGGCATTAATACGTTGTGCTACTCCTCCTGAAATCCCTAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTAGCATCAACCAGTGAAAAGGCCGTTGCAATTGCAGCAGCTGCTGCAGATAAAAAAGCTTCCGATAATTATCTCGAGTTTGATTTCTTTTAG 1824 43.8 MASIAGSKASSNQPQQPANGEMANGKDTGSLPPQISKLSISDQSKSVKSISKKDVELSSDKKSPVSNQNGSAKLLTEKFNFSVPSPGLKQTPTEVDSPINEAKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDISDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDLGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAVAIAAAAADKKASDNYLEFDFF 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6653770 6658419 + MELO3C008002.2.1 Cme08g01025 335288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01025 607 MobiDBLite consensus disorder prediction 61 135 - -
Cme08g01025 607 MobiDBLite consensus disorder prediction 1 135 - -
Cme08g01025 607 SUPERFAMILY Protein kinase-like (PK-like) 187 575 IPR011009 -
Cme08g01025 607 ProSiteProfiles Protein kinase domain profile. 212 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01025 607 MobiDBLite consensus disorder prediction 1 46 - -
Cme08g01025 607 Gene3D Transferase(Phosphotransferase) domain 1 296 363 - -
Cme08g01025 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 333 345 IPR008271 GO:0004672|GO:0006468
Cme08g01025 607 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 607 - -
Cme08g01025 607 PANTHER FLIPPASE KINASE 1-RELATED 5 607 - -
Cme08g01025 607 SMART serkin_6 212 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01025 607 CDD STKc_phototropin_like 211 572 - -
Cme08g01025 607 Gene3D Phosphorylase Kinase; domain 1 210 295 - -
Cme08g01025 607 Gene3D Transferase(Phosphotransferase) domain 1 443 567 - -
Cme08g01025 607 Pfam Protein kinase domain 446 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01025 607 Pfam Protein kinase domain 213 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00141 Cme-Chr5:958801 Cme08g01025 Cme-Chr8:6653770 4.51E-77 dispersed
Cme05g01934 Cme-Chr5:27963316 Cme08g01025 Cme-Chr8:6653770 1.14E-146 dispersed
Cme08g01025 Cme-Chr8:6653770 Cme12g00788 Cme-Chr12:14316880 0 dispersed
Cme08g01025 Cme-Chr8:6653770 Cme08g01220 Cme-Chr8:8594012 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65089 PF00069 Pkinase 6.40E-38 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01025 K08286 - csv:101209748 1111.29