Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01044 ATGGACACCGCTGGTAGACTCATTGCTGGGTCTCATAATAGAAATGAGTTTGTTCTGATCAATGCAGATGAGACTGCTCGGATCAAGTCTGTGAAAGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAAGTAGAGTTAACTGCCGAGGGAGAGCTCTTTGTTGCCTGTAACGAATGTGCTTTCCCAGTTTGTAGACCTTGCTATGAGTACGAGAGAAGAGAGGGAAATCAAGCTTGTCCGCAGTGTAAAACTAGATACAAGCGCATTAAAGGCAGTCCTAGGGTTGAAGGTGACGAGGATGAAGATGATATTGATGATTTGGACAATGAGTTTGATTATGGAAACCTCGATGATTTTGGCCCTCACCATGCTGCTGAAGGATCATATGGATCGCACCTCAACTCTGGCCGCGGTTCCCACCCTAATGCATCTCATATCCCTGGACAGTCAGAGCACGAACCTTCTCCCCTTGGTTCTGAGATTCCCCTCCTGACATATGGTGAGGAGGATTATGAAATTTCTGCCGATCAACATGCTCTTGTACCCCATTTTATGGGTAATGGAAATAGAGTCCATCCAATGCCTTCCCCTGATCGATCAAGTCCTTCACAAGGTAGACCAATGGTTCCCCACAAAGATTTTGCATTATATGGTTATGGGAGCGTGGCATGGAAGGACAGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCCAGGGGTTGATGATGATGGAAATGATATTGACGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAGCCTCTATCAAGGAAACTGCCTATCTCTTCAAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTTGGCCTGTTTTTCCATTACAGAATTCTTCATCCAGTTGAAGATGCCTATGGCCTGTGGCTGACTTCAGTAATATGTGAAATATGGTTTGCTGTATCGTGGATTCTCGATCAGTTCCCAAAATGGTATCCAATTGAAAGAGAAACTTATCTTGATCGGCTCTCACTAAGGTATGAAAAAGAAGGCAAACCTTCTGAATTAGCCAGTGTGGACATATTTGTTAGTACTGTCGATCCAATGAAAGAACCTCCTTTGATCACTGCAAATACAGTTCTTTCCATCCTTGCAGTCGACTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTCAATATTGAGCCTCGTGCCCCAGAGTTTTATTTCTCTCAGAAGATTGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGGTGAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCCGAGGATGGCTGGACAATGCAAGATGGTACTCCGTGGCCTGGGAACAATGTTCGAGACCACCCTGGCATGATTCAGGTCTTCCTTGGCCAAAATGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTTTGGTTTATGTTTCTCGTGAAAAGCGGCCAGGGTTCGAACATCACAAAAAGGCTGGTGCCATGAATTCACTGGTTCGAGTCTCAGCAGTTCTTTCTAATGCTCCTTATCTTCTCAATGTTGACTGTGATCACTACATTAATAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCTGGAAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATCGATCGACATGATAGATATTCAAACCGTAACGTAGTATTCTTTGATATTAACATGAAAGGATTAGATGGACTACAAGGACCTATATATGTTGGTACAGGATGTGTTTTCCGGAGGGTTGCCCTCTATGGATATGATGCTCCTACCAAGAAAAAACCCCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGTTGTCTGTGTTGTGGGTCTAGGAGTAAGAAAGGAAAGGCCAATAATTCAAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTTGAGAATATCGAAGAGGGAATCGAAGACCTAAGTATAGAGAAATTGAATGCATCTGAAATAAAATTGGCGAAAAAATTCGGGCAGTCTCCAGTGTTTGTTGCCTCAACCCTGTTGGAAAATGGTGGAGTTCCTCATGATGTGAGTGCTGCATCTCTCCTAAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCATGGCTGGCGGTCTGTGTATTGTATTCCCAAGAGGCCCGCATTTAAAGGATCGGCTCCAATCAATCTCTCAGATCGTCTACACCAAGTTTTGCGGTGGGCTCTAGGATCCGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGCTATGGAGGAGGGTTGAAATGTCTGGAACGATTTTCGTACATAAACTCAGTGGTCTACCCGTGGACCTCAATCCCATTGCTTGTTTACTGTAGTCTGCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCTATTGCTGCGACCGGTATTCTTGAGATGCAGTGGGGAGGTGTTGGGATTGACGACTGGTGGAGAAACGAACAATTCTGGGTTATTGGAGGTGTTTCGTCACATCTTTTTGCTCTCTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTTAGTACAAACTTCACAGTTACATCCAAAGCAGCCGATGATGGTGAATTCTCAGAGCTCTATATCTTCAAGTGGACATCGTTGTTAATACCTCCCACGACCTTATTGATCATAAACATTGTTGGTGTGATCGTTGGGGTCTCAGATGCCATCAATAATGGGTATGATTCCTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCTTTCTTGAAGGGGTTGTTAGGGAAACAAGACCGGTTACCAACGATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACTTTACTCTGGGTAAGAATCAACCCATTTGTATCCAAAGACGGTCCTGTTTTAGAAGTTTGCGGGTTGAATTGCGACTAG 3276 43.01 MDTAGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICGDEVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNLDDFGPHHAAEGSYGSHLNSGRGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEDYEISADQHALVPHFMGNGNRVHPMPSPDRSSPSQGRPMVPHKDFALYGYGSVAWKDRMEDWKKKQNDKLQVVKHPGVDDDGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVEDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRVNALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPTKKKPPSKTCNCLPKWCCLCCGSRSKKGKANNSKKKKTKHREASKQIHALENIEEGIEDLSIEKLNASEIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKCLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6767285 6773665 - MELO3C008022.2.1 Cme08g01044 335307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01044 1091 MobiDBLite consensus disorder prediction 134 151 - -
Cme08g01044 1091 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cme08g01044 1091 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cme08g01044 1091 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1090 - -
Cme08g01044 1091 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cme08g01044 1091 MobiDBLite consensus disorder prediction 191 210 - -
Cme08g01044 1091 SUPERFAMILY RING/U-box 25 111 - -
Cme08g01044 1091 MobiDBLite consensus disorder prediction 686 701 - -
Cme08g01044 1091 MobiDBLite consensus disorder prediction 100 115 - -
Cme08g01044 1091 Pfam Cellulose synthase 365 1079 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme08g01044 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cme08g01044 1091 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 518 657 IPR029044 -
Cme08g01044 1091 MobiDBLite consensus disorder prediction 683 702 - -
Cme08g01044 1091 MobiDBLite consensus disorder prediction 93 163 - -
Cme08g01044 1091 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1090 - -
Cme08g01044 1091 SUPERFAMILY Nucleotide-diphospho-sugar transferases 378 909 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00961 Cme-Chr3:18286572 Cme08g01044 Cme-Chr8:6767285 0 dispersed
Cme08g01044 Cme-Chr8:6767285 Cme08g01623 Cme-Chr8:16699527 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01044 K10999 - csv:101211094 2177.13