Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01049 ATGGGTTCAAAAAAACCCTATTTTGTAGCAATAGCAACACAAGTATTTCTTGCTGGAATGAGTCTTCTTTCTAAAGCAGCTTTTGCTTCGGGAATGAATACCTTCGTGTTTGTGTTCTATAGACAAGCTGCTGGAGCTGTTTTTTTCCTTCCTCTTCTGTTTTTTTTAAGAAGAAAAGAAAGCCGATCACTTTCACTTAAAGATTTCTTGAAAATTTTCGTGATTTCGTTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTTGCTGTTGATTATACATCTGCAAACTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTTTTCGCTGTTTTATTGAGGATGGAGAAAGTAAATTTAAGAAAAGTGGCAGGAATTGCAAAAGCTTTTGGAATATTAATATGCATTGGAGGAGTGATAACACTTGCATTCTACAAAGGTCCATATTTGAAGCCACTCATCAACCATCACCTTTTGAAACTTCACAAATCATCACATAATATTCCTCATTCTTCCTCTTCTAAAACTTGGATTATTGGCTGTTTCCTTCTCTTCGTCTCCAGCATCTCTTGGGGTTTGTGGTTTGTTCTTCAGGCTTATTTTCTCAAGACATACCCATCACCTTTGGAGTTTATAAGTTACCAAACATTATTAAGCGCAGCCCAATCTTTTGTGATTGCTATTGCAATGGAAAGAGACCCTTCTGAGTGGAAATTGGGTTGGAACATTAGGCTTCTTGCTGTCGTTTATTGTGGAGTTCTTGTAACAGTTGTTTCGAATTTCTTACAATGTTGGGTAATAAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACACCATTGAATGTCATTGCCACTATTATTGGCTCTGAATTGCTTTTGGGTGAAGGAATCAACTTGGGAAGTCTTATTGGTGCCATTTTGTTGGTGATAAGTCTCTACAGTGTATTATGGGGAAAAAGCAAAGAGCTCAACATGGTTGATTCAGATAGTAACATCCAAACAAATGTATTTGTTTCACCTCAATTACCAAAAGATTTGTCAGAGATGAGACCAACGGCTGAACCATAG 1083 37.67 MGSKKPYFVAIATQVFLAGMSLLSKAAFASGMNTFVFVFYRQAAGAVFFLPLLFFLRRKESRSLSLKDFLKIFVISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRKVAGIAKAFGILICIGGVITLAFYKGPYLKPLINHHLLKLHKSSHNIPHSSSSKTWIIGCFLLFVSSISWGLWFVLQAYFLKTYPSPLEFISYQTLLSAAQSFVIAIAMERDPSEWKLGWNIRLLAVVYCGVLVTVVSNFLQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVISLYSVLWGKSKELNMVDSDSNIQTNVFVSPQLPKDLSEMRPTAEP 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6850257 6854318 + MELO3C008027.2.1 Cme08g01049 335312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01049 360 PANTHER WAT1-RELATED PROTEIN 5 336 IPR030184 GO:0016021|GO:0022857
Cme08g01049 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 148 - -
Cme08g01049 360 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020|GO:0016021
Cme08g01049 360 Pfam EamA-like transporter family 5 138 IPR000620 GO:0016020|GO:0016021
Cme08g01049 360 PANTHER WAT1-RELATED PROTEIN 5 336 - -
Cme08g01049 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01047 Cme-Chr8:6815908 Cme08g01049 Cme-Chr8:6850257 2.06E-161 dispersed
Cme08g01049 Cme-Chr8:6850257 Cme08g01059 Cme-Chr8:6911230 9.91E-143 dispersed
Cme08g01055 Cme-Chr8:6872906 Cme08g01049 Cme-Chr8:6850257 4.12E-58 dispersed
Cme08g01060 Cme-Chr8:6915776 Cme08g01049 Cme-Chr8:6850257 1.22E-72 dispersed
Cme08g01048 Cme-Chr8:6838691 Cme08g01049 Cme-Chr8:6850257 1.97E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01049 - - csv:101219744 661.759