Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01062 ATGGCCGATGCCGAGGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCTCCTAGGGCTGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACTGGTGTCATGGTTGGGATGGGCCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAACATGGTATTGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACGTTCTACAATGAGCTTCGTGTTGCTCCCGAAGAACACCCTGTGCTTCTGACTGAGGCGCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGACGTACCACTGGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTATGCCCTTCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACTGCAAAGAGCAGTTCCTCTATTGAGAAGAACTACGAACTTCCTGATGGACAAGTCATCACCATCGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATTGGTATGGAAGCTGCAGGAATCCACGAAACTACTTACAACTCCATCATGAAGTGTGACGTAGATATCAGAAAGGACCTTTACGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGTATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTTGTTGCACCACCTGAAAGGAAATACAGTGTTTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGACGAATCTGGCCCATCGATCGTCCACAGGAAGTGCTTCTAA 1134 47.44 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6930941 6933730 - MELO3C008032.2.1 Cme08g01062 335325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01062 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cme08g01062 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Cme08g01062 377 Gene3D - 10 371 - -
Cme08g01062 377 PRINTS Actin signature 28 37 IPR004000 -
Cme08g01062 377 PRINTS Actin signature 51 62 IPR004000 -
Cme08g01062 377 PRINTS Actin signature 63 85 IPR004000 -
Cme08g01062 377 PRINTS Actin signature 117 130 IPR004000 -
Cme08g01062 377 PRINTS Actin signature 142 161 IPR004000 -
Cme08g01062 377 PRINTS Actin signature 238 254 IPR004000 -
Cme08g01062 377 Gene3D - 140 340 - -
Cme08g01062 377 PANTHER ACTIN 1 376 IPR004000 -
Cme08g01062 377 SMART actin_3 7 377 IPR004000 -
Cme08g01062 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cme08g01062 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cme08g01062 377 PANTHER ACTIN 1 376 - -
Cme08g01062 377 Pfam Actin 5 377 IPR004000 -
Cme08g01062 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cme08g01062 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cme08g01062 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g01062 Cme11g00076 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00280 Cme-Chr1:2107728 Cme08g01062 Cme-Chr8:6930941 0 dispersed
Cme01g02462 Cme-Chr1:32808077 Cme08g01062 Cme-Chr8:6930941 5.47E-66 dispersed
Cme03g00103 Cme-Chr3:1464441 Cme08g01062 Cme-Chr8:6930941 2.55E-83 dispersed
Cme06g02779 Cme-Chr6:35052688 Cme08g01062 Cme-Chr8:6930941 5.14E-38 dispersed
Cme08g01062 Cme-Chr8:6930941 Cme11g00076 Cme-Chr11:613737 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01062 K10355 - csv:101215469 758.059