Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01069 ATGGCCGCCGGATACCCCCTTTTCCGAATGACCGATACTGGGAGCAGCAGCGGCCGCGACTTTAGCGTAACTTCGATGAGGACAAACATGGAGATCTGTACTAAATTTGAAGTTGGTTTGCACTCCAATCCTCGAGAGATGGCGGGTGACCCTGCTCCACTTCGCCAACATTGCTACAGCTACAGCCCTTCGGTCATCTCTTTCACTCACAGCTCAAAGAGGGAATCCTCAAAATCCTCTGCAGCTTTCAGCCTTTCACCGGCTGCTGTTTCCATTACAATAGTTACCAAAATTTACAATCGCCGACCTTCATCGGAACTGCGTGCACTCACCGGAATGACCCGAGACGGCGTACAATTTGACGCCGCGAAACGATCATATCGGAATGCTAAGGCCGAGGGGAACCGGCACGAGGAAGCCAAATGGGCCAATGTAATCGGCAATATCTTGAAGAATAGAGGAGAATACGTAAAAGCCCTTAAGTGGTTTCGGATTGATTACGATGTGTCGGTTAAGTACTTACCTCAGAAGCATATGCTGGCGACGTGCCAGTCCCTGGGCGAGGTCTATCTTAGGCTCGAACAATTTAAAGATGCTCTAATTTATCAGAAGAAACATTTAGAGCTAGCAAAAAATGCTAATGACCTTGTGGAACAGCAAAGGGCTAACACTCAACTGGGTCGTACTTACCATGAGCTGTTTTTGAAATCTGACGATGACCATCTTTCAGTAAGAAATGCCAAAAAGTATTTCAGAGTTGCCATGGAACTGGCAAAGTTTCTGAAAGATCACCCACCAAAAACTGGATGTTCATTCCTCAAGGAATATATTGATGCTCATAATAATTTGGGAATGCTTGAAATGGATCTTGATAATTTGGAAGAGGCCAAAAAGATCTTAACAGAAGGACTAGAGATTTGCGAGGAAGAAGAGGTGGATCAGGATGATGATGGTCGTAGCAGGCTCCATCACAACCTCGGAAGTGTATATATGGAGCTAAGAATGTGGGATCAGGCTAAGAAGCATGTTGAGAAGGATATTATAATCTGTAAGAATATTGGGCATTGCCAAGGAGAGGCTAAAGGATACATTAACCTTGGTGAACTGCATTACAGGGTTCAAAAGTATGATGAAGCAATTCATTGCTATCGAAAGGCTCTTCACCTAGCAAAATCAATGGAAGATGAGGACGCTTTGGCAAGGCAAGTTGATCAGAATATCAGTACTGTTAAAGAAGCTATGCAAGTGATGGTTGAACTAAGAAAAGAAGAGCAAAATCTTAAGAAGCTAATGAGAGAAATGGTCACTGCTAGAGGCACACCACGTGAGCGCAAATGTCTACTACAGCAAAATGCTTCTCTTGATCGCTTAATTGAAAAATCAAGTACGATTTCTGCATGGATGCAGCACCTTGAATTTGCAAAAAGGAAAAAAAGAGTAGCAAGTGAACTTTGCGACAAGGAAAAGCTGAGTGATTCTTATCTGGCTATTGGGGAATCATATCATAAACTAAGAAAATTCACAAAATCCATCAAATGGTATGTGAAGAGCTGGGAAGTATACAAGTCTATCGGTAATTTAGAGGGACAAGCACTAGCCAAGATTAATATTGGTGATGTTTACGACTGTGATGGTAAGTGGACAGAAGCACTAGATGCATTTGAGGAGAGTTACAGGATTGCTGTTGAGGCTAAACTTCCTTCTGTCCAGCTTTCAGCACTGGAGAATATGCATTATAGCCACATGATACGATTTGATAATGCAGAAGAAGCTAGGCAGTTACAGTCTCAAATTGACCAATTGAAGGAGAAAACTAAAATTGGTAATGATACAAGGGCAGAGGATTGTTGCTCTGAAACTGATACAGAAGCAAACGATGCTCTATCAGACAGTTCATCTGATGAGTGCTCCTTGTCAGAAACTAGAAAATCTTGTAAAAGCAAATTTAACTCTTCAAAATCTTTAGCTGATTTAGAAGAGCCAAATGACGCAGTTACTTTTACTTCATCTTTCAAGCAGCATGAAAGGTCACCTAGAATCAAATCATTTGACATGGAAAAATGCAATGCTTCTTCTAACCCATCTGAATTTTCACCTATAAGTTTGTCTAAGTCAGCTGGTAATCAACAGACAACCATTGGTCGTAAACGCATTCGTGTGGTTCTTTCTGATGATGATGAAGACGAGGATGAAATGACAGATTTCTCAAAATCAAGGCCTCATTTATGTCGGGGAGAGAATTCTGCAACTTCTGATGACAACAAGAATAAACAATACCCAAGAAATCTCACAGCTGAAGTTAAGGAGGGTTCAACAACAACCAGCAAACATGCAAGCAGGTCTTGTGAAGATATTGAAGAAAGCACTGGTTCACATAAATATAAGAGTCGAATCATGGGGACTCAAAATGATAAAACTTCTGGAACCCCAAATGCTGATGAAATATTTCCTTCAGATTCTGCTGCTAGTGGCTCAAAATTTGAAGTTGACATCTCTGAAAATCTGTTGCATAGATATAAGGCTACCAAGTCGAAGCCTTCGGAGCAGGGTGAATGTGTTACATTCAAAATTGATAATGAGCTGATACACGTAGATGTTGCCTTATTTAGCAATATGCTAAGCATTGAATCTGCAAAGGAAGAACTAGCATGCATGTACTATCTACAGCTTCCCCTTGAAAAGAGATCAGAGGATTACCTCTTGGGTAGACAGTCATGGGCACCTTGTAGGAATGGGCTAGTATGGATTAAGCACTTGGTCCACCTATTGAAGGAAATCAAAGATCCTATATTTTGGAACTTCCGGGAGGAAAAAGGTCTGTTACCTGTGATTCAACATATAAGTCATGATGGGAGAACGCTGGAGACCCTTGAATTTTCAAAAACCTTTGACCATGGGAGAAATCTTTTGTTTGAAGCTGTCATCAATGGATGGGTTTCAAAACCCTTGATAAAACTCTATATTGACTACTGCAAGGAGTTATCTGAGACACCTAACATGAAGCTGGTGAAGAAACTGTACAATCTGGAGGCTTCAGATGACGAGATTGCAGTCTCTGATTGTGATCTGCAAGATTTATCTATAAGTCCATTGTTGAATGCGCTGCACACCCAGAAAACTTTTGCCATTTTAGACCTTTCTCACAATTTCTTAGGAAATGGAACGATGGAGAAAATTCAGCAGGTTTTCAAGCAGTCCAGCCAGACACATGACTTGACGTTAGATTTACACTGCAATCGATTTGGTCCAACTGCTTTATACCAGATTTGTGAATGCCCTATTCTGTTCGCTCGATTGGAAGTGCTTAACATATCTGGAAATCGCCTTACTGATGCTTGCGGGTCATACCTGTCAACTATCTTAAAAAATTGCAAAGGTCTTTGGTGCTTGAATATTGAACGATGTTCCATCACATCTAGAACAATTCAAAAGGTTGCTGATGCACTGGAAGTTGGAGCATCACTGGAAAAGCTCTATATAGGATACAACAACTCAATCTCAGGAAATGCCCTCAGTAGTTTATTTGTTAAGCTCACAGTACTGAATAGGTTCAATAGTCTTGGTCTATCTGGTTTGAAGTTGAGCAAGCCTGTTATGGAAGGCCTTCTCCAACTTGTTAAATCCTTGGGTTTGTCTGGATTAATGCTTGGGGGCACTGGCATTGGAGATCAAGCGTTATTCTTCCAGTTGGTGATGAGACATTACAAAACTTCGCAGGATGCTGCATTAGAGATAACTGAATCATTTAGTGGAAGCGAAGAGCTCGTGAAACTTGACTTAGCTTATTGTGGACTGACATCCAAGTATCTTGTCAAATTTCGCATGCATGAGCTGAACCTTTCTGGGAATGCCATCATGAAAGAGGGTTGTCATGCAGTATCGTCACTAATTGCTAACCCTCAATGCGGCATCAAAGTCTTGCTTCTCAACAATTGTCAACTTGGCCTAGCTGGAGTTGCTCAAATAATTCAAGCTATAGCAGGTAACCACTATCTTGAAGAACTCAATCTGGCTGATAACATTGATCTTGATAAACATCCCCTGCAATGTAACATAATAGAGAAAGAAAATAAAGAACTTATTCAACCGTGTCATGATATATCTGAGCCTCATGGCCTAACATATTCAAGCAAGGAGTTAGACCCCGCTCAACAGAATTTAGATGAGATAAACACTGAATACAATCAGCTTGAAGTTGCTGATAGTGAAGAACCAATTAGAGAAGCTCCAGCATCCGGGATCGATGATAGTTGTGCAAGTTCATGTGAAAGAAAATCCACATCTCTTGATTGCCAGTTTATTTTATCACTTTCAACTGCAATTGGGATGGCAAAGACATTGCGATTACTGGATCTTAGCAATAATGGTTTTTCTTCCCAAGAGATTGAAACAATATTTGGTGCATGGTCAACTTCAAGAACTGATTTTGCCCAAAGACATATTAAGGACAACATAGTACATCTTTACGTCAAGGGTACGAAGTGTTGTGTGAGACCCTGCTGCAAGAAGGATTAA 4515 40.93 MAAGYPLFRMTDTGSSSGRDFSVTSMRTNMEICTKFEVGLHSNPREMAGDPAPLRQHCYSYSPSVISFTHSSKRESSKSSAAFSLSPAAVSITIVTKIYNRRPSSELRALTGMTRDGVQFDAAKRSYRNAKAEGNRHEEAKWANVIGNILKNRGEYVKALKWFRIDYDVSVKYLPQKHMLATCQSLGEVYLRLEQFKDALIYQKKHLELAKNANDLVEQQRANTQLGRTYHELFLKSDDDHLSVRNAKKYFRVAMELAKFLKDHPPKTGCSFLKEYIDAHNNLGMLEMDLDNLEEAKKILTEGLEICEEEEVDQDDDGRSRLHHNLGSVYMELRMWDQAKKHVEKDIIICKNIGHCQGEAKGYINLGELHYRVQKYDEAIHCYRKALHLAKSMEDEDALARQVDQNISTVKEAMQVMVELRKEEQNLKKLMREMVTARGTPRERKCLLQQNASLDRLIEKSSTISAWMQHLEFAKRKKRVASELCDKEKLSDSYLAIGESYHKLRKFTKSIKWYVKSWEVYKSIGNLEGQALAKINIGDVYDCDGKWTEALDAFEESYRIAVEAKLPSVQLSALENMHYSHMIRFDNAEEARQLQSQIDQLKEKTKIGNDTRAEDCCSETDTEANDALSDSSSDECSLSETRKSCKSKFNSSKSLADLEEPNDAVTFTSSFKQHERSPRIKSFDMEKCNASSNPSEFSPISLSKSAGNQQTTIGRKRIRVVLSDDDEDEDEMTDFSKSRPHLCRGENSATSDDNKNKQYPRNLTAEVKEGSTTTSKHASRSCEDIEESTGSHKYKSRIMGTQNDKTSGTPNADEIFPSDSAASGSKFEVDISENLLHRYKATKSKPSEQGECVTFKIDNELIHVDVALFSNMLSIESAKEELACMYYLQLPLEKRSEDYLLGRQSWAPCRNGLVWIKHLVHLLKEIKDPIFWNFREEKGLLPVIQHISHDGRTLETLEFSKTFDHGRNLLFEAVINGWVSKPLIKLYIDYCKELSETPNMKLVKKLYNLEASDDEIAVSDCDLQDLSISPLLNALHTQKTFAILDLSHNFLGNGTMEKIQQVFKQSSQTHDLTLDLHCNRFGPTALYQICECPILFARLEVLNISGNRLTDACGSYLSTILKNCKGLWCLNIERCSITSRTIQKVADALEVGASLEKLYIGYNNSISGNALSSLFVKLTVLNRFNSLGLSGLKLSKPVMEGLLQLVKSLGLSGLMLGGTGIGDQALFFQLVMRHYKTSQDAALEITESFSGSEELVKLDLAYCGLTSKYLVKFRMHELNLSGNAIMKEGCHAVSSLIANPQCGIKVLLLNNCQLGLAGVAQIIQAIAGNHYLEELNLADNIDLDKHPLQCNIIEKENKELIQPCHDISEPHGLTYSSKELDPAQQNLDEINTEYNQLEVADSEEPIREAPASGIDDSCASSCERKSTSLDCQFILSLSTAIGMAKTLRLLDLSNNGFSSQEIETIFGAWSTSRTDFAQRHIKDNIVHLYVKGTKCCVRPCCKKD 1504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6981826 6996862 + MELO3C008038.2.1 Cme08g01069 335332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01069 1504 MobiDBLite consensus disorder prediction 724 792 - -
Cme08g01069 1504 MobiDBLite consensus disorder prediction 686 711 - -
Cme08g01069 1504 Coils Coil 1380 1400 - -
Cme08g01069 1504 MobiDBLite consensus disorder prediction 752 778 - -
Cme08g01069 1504 SUPERFAMILY TPR-like 276 560 IPR011990 GO:0005515
Cme08g01069 1504 Coils Coil 584 604 - -
Cme08g01069 1504 SMART LRR_RI_2 1038 1065 - -
Cme08g01069 1504 SMART LRR_RI_2 1096 1123 - -
Cme08g01069 1504 SMART LRR_RI_2 1272 1299 - -
Cme08g01069 1504 SMART LRR_RI_2 1301 1328 - -
Cme08g01069 1504 Coils Coil 276 310 - -
Cme08g01069 1504 Coils Coil 410 440 - -
Cme08g01069 1504 Gene3D Ribonuclease Inhibitor 991 1176 IPR032675 -
Cme08g01069 1504 Gene3D Tetratricopeptide repeat domain 113 430 IPR011990 GO:0005515
Cme08g01069 1504 Gene3D Tetratricopeptide repeat domain 438 620 IPR011990 GO:0005515
Cme08g01069 1504 ProSiteProfiles TPR repeat region circular profile. 360 389 - -
Cme08g01069 1504 MobiDBLite consensus disorder prediction 733 751 - -
Cme08g01069 1504 MobiDBLite consensus disorder prediction 667 711 - -
Cme08g01069 1504 MobiDBLite consensus disorder prediction 609 637 - -
Cme08g01069 1504 Pfam Tetratricopeptide repeat 278 308 IPR019734 GO:0005515
Cme08g01069 1504 Pfam Tetratricopeptide repeat 493 561 - -
Cme08g01069 1504 Pfam Tetratricopeptide repeat 320 391 - -
Cme08g01069 1504 Gene3D Ribonuclease Inhibitor 1221 1487 IPR032675 -
Cme08g01069 1504 ProSiteProfiles TPR repeat profile. 360 393 IPR019734 GO:0005515
Cme08g01069 1504 PANTHER PROTEIN TONSOKU 113 1504 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Cme08g01069 1504 SUPERFAMILY RNI-like 935 1225 - -
Cme08g01069 1504 SUPERFAMILY TPR-like 125 233 IPR011990 GO:0005515
Cme08g01069 1504 SMART tpr_5 360 393 IPR019734 GO:0005515
Cme08g01069 1504 SMART tpr_5 140 173 IPR019734 GO:0005515
Cme08g01069 1504 SMART tpr_5 277 310 IPR019734 GO:0005515
Cme08g01069 1504 SMART tpr_5 531 564 IPR019734 GO:0005515
Cme08g01069 1504 SMART tpr_5 491 524 IPR019734 GO:0005515
Cme08g01069 1504 SMART tpr_5 320 353 IPR019734 GO:0005515
Cme08g01069 1504 SMART tpr_5 180 213 IPR019734 GO:0005515
Cme08g01069 1504 SUPERFAMILY RNI-like 1163 1470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01069 - - - csv:101207276 2467.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1265 Blo04g00969 . . . Bpe15g00397 . . . . . Cma03g01081 . Car03g00971 . Sed10g0490 . Cpe10g00348 Bhi03g01379 Tan03g1329 Cmetu08g0165 . Hepe04g1126 . . Cla01g01530 Cam01g1598 Cec04g1243 Cco04g1312 Clacu01g1623 Cmu01g1509 Cre04g1188 . . . . Lsi01g01135 . . Cme08g01069 . . . Bda14g01059 . . Bma03g01034 . . Cmo03g01070 . . . . . . . . . . . . . . . . . . . . . . Csa06g02797 Chy02g01038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g01069 Cme_Chr08 FPKM 34.851963 36.758724 49.753674 48.383453 30.980629 30.745657 32.538521 106.362282 114.992142 124.54847