Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01071 ATGGTGAAAGATGACTTATGTATTACAATTCCCAGCGATTTCAGGTGTCCGATCTCCTTAGATGTCATGAAATCCCCTGTAAGTTTATGTACCGGAGTGACTTACGATCGTTCCAGTATTCAGAAATGGCTTGATAATGGAAACAACACTTGTCCTGCCACCATGCAGGTCCTTCAAACCAAGGAGTTTGTACCTAACCACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCATCACCAACGCCTTCACTCCCCTGTTTCCGACTCTTCTCTTTCCTCCCATCAAATTCTTCGCCTCATCAACCGTATGGATGACCATCGATCACGTGCTGATTCTCTTCCGCGCCTTGTTTCTTTCGCTTCTGAATCGGTGGAGAATCGGAGGCTTCTCTGTGGAATTGATGGACTCGTGCCGGTACTTGTTGATCTTCTTTGCAATGTCGATGCCGGTGATTTGGTTGACCAAACGGTGAGGTTGTTGCATTTGATTCGGAGTGAGATTGGGGATAAGGAGAGGTTTGTGAAGACGATGTTGAATAGCGATCGTAATTGTATTTCGTCTCTGCTTTTGATTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCTGCTAATCTGTTGGAATATCTCGCAATCGACGCCGAAGCGAAGATTGTGATTGCAGAAACGGATGGATTGATGCGAGAATTACTCAAATTAATCAATTCTGAAAACGATACAACCGTAATTGAATCCGCTCTATCATGCCTAATTTCGATTTCAATGCCGAAACGGATCAAAATCAAATTAGTCCAACTCGGAGTGATAAAATCAGTTACGAAGCTTCTCTCGGAGTCGAATTCGAGTTCAAGCATTTCGATGACGGAGAAGGTTCTGAAAGTTCTAGAAACGGCATCAACGGTGAGAGAAGGAAGAAAAGAGATCGGAGAAGACTCGGTATGCGTAGCGGCGATAGTACAGAAAGTGTTGAAGGTATCGAACGCGGCGACGGAGCACGCGGTGACGACACTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGGAGAGGCGTTGACGAAGGCGAATGGATTAACGAAGATTTTGCTGTTAATGCAGAGCAATTGCTCACCGCCGGTACGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGGATCAATTCGAAATCTTGCCTATCGAGCTACGATACAAAAACTACGCATATCATGCCATGTTAA 1227 45.31 MVKDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSHHQRLHSPVSDSSLSSHQILRLINRMDDHRSRADSLPRLVSFASESVENRRLLCGIDGLVPVLVDLLCNVDAGDLVDQTVRLLHLIRSEIGDKERFVKTMLNSDRNCISSLLLILRKGTVELKICSANLLEYLAIDAEAKIVIAETDGLMRELLKLINSENDTTVIESALSCLISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSISMTEKVLKVLETASTVREGRKEIGEDSVCVAAIVQKVLKVSNAATEHAVTTLWSVCYLFRDEKAGEALTKANGLTKILLLMQSNCSPPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7018231 7019690 + MELO3C008040.2.1 Cme08g01071 335334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01071 408 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
Cme08g01071 408 SUPERFAMILY RING/U-box 6 83 - -
Cme08g01071 408 Gene3D - 169 390 IPR011989 -
Cme08g01071 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
Cme08g01071 408 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 408 - -
Cme08g01071 408 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Cme08g01071 408 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cme08g01071 408 SUPERFAMILY ARM repeat 106 390 IPR016024 -
Cme08g01071 408 Pfam U-box domain 10 81 IPR003613 GO:0004842|GO:0016567
Cme08g01071 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g01071 Cme11g00070 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00269 Cme-Chr7:1749607 Cme08g01071 Cme-Chr8:7018231 9.99E-36 dispersed
Cme08g01071 Cme-Chr8:7018231 Cme11g00070 Cme-Chr11:576543 9.85E-65 dispersed
Cme08g01071 Cme-Chr8:7018231 Cme05g00240 Cme-Chr5:1752969 1.70E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01071 - - csv:101207530 713.375