Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01071 ATGGTGAAAGATGACTTATGTATTACAATTCCCAGCGATTTCAGGTGTCCGATCTCCTTAGATGTCATGAAATCCCCTGTAAGTTTATGTACCGGAGTGACTTACGATCGTTCCAGTATTCAGAAATGGCTTGATAATGGAAACAACACTTGTCCTGCCACCATGCAGGTCCTTCAAACCAAGGAGTTTGTACCTAACCACAATCTCCACCGCCTCATTCAGATTTGGTCCGATTCCCATCACCAACGCCTTCACTCCCCTGTTTCCGACTCTTCTCTTTCCTCCCATCAAATTCTTCGCCTCATCAACCGTATGGATGACCATCGATCACGTGCTGATTCTCTTCCGCGCCTTGTTTCTTTCGCTTCTGAATCGGTGGAGAATCGGAGGCTTCTCTGTGGAATTGATGGACTCGTGCCGGTACTTGTTGATCTTCTTTGCAATGTCGATGCCGGTGATTTGGTTGACCAAACGGTGAGGTTGTTGCATTTGATTCGGAGTGAGATTGGGGATAAGGAGAGGTTTGTGAAGACGATGTTGAATAGCGATCGTAATTGTATTTCGTCTCTGCTTTTGATTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCTGCTAATCTGTTGGAATATCTCGCAATCGACGCCGAAGCGAAGATTGTGATTGCAGAAACGGATGGATTGATGCGAGAATTACTCAAATTAATCAATTCTGAAAACGATACAACCGTAATTGAATCCGCTCTATCATGCCTAATTTCGATTTCAATGCCGAAACGGATCAAAATCAAATTAGTCCAACTCGGAGTGATAAAATCAGTTACGAAGCTTCTCTCGGAGTCGAATTCGAGTTCAAGCATTTCGATGACGGAGAAGGTTCTGAAAGTTCTAGAAACGGCATCAACGGTGAGAGAAGGAAGAAAAGAGATCGGAGAAGACTCGGTATGCGTAGCGGCGATAGTACAGAAAGTGTTGAAGGTATCGAACGCGGCGACGGAGCACGCGGTGACGACACTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGGAGAGGCGTTGACGAAGGCGAATGGATTAACGAAGATTTTGCTGTTAATGCAGAGCAATTGCTCACCGCCGGTACGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGGATCAATTCGAAATCTTGCCTATCGAGCTACGATACAAAAACTACGCATATCATGCCATGTTAA 1227 45.31 MVKDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSHHQRLHSPVSDSSLSSHQILRLINRMDDHRSRADSLPRLVSFASESVENRRLLCGIDGLVPVLVDLLCNVDAGDLVDQTVRLLHLIRSEIGDKERFVKTMLNSDRNCISSLLLILRKGTVELKICSANLLEYLAIDAEAKIVIAETDGLMRELLKLINSENDTTVIESALSCLISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSISMTEKVLKVLETASTVREGRKEIGEDSVCVAAIVQKVLKVSNAATEHAVTTLWSVCYLFRDEKAGEALTKANGLTKILLLMQSNCSPPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7018231 7019690 + MELO3C008040.2.1 Cme08g01071 335334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01071 408 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
Cme08g01071 408 SUPERFAMILY RING/U-box 6 83 - -
Cme08g01071 408 Gene3D - 169 390 IPR011989 -
Cme08g01071 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
Cme08g01071 408 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 408 - -
Cme08g01071 408 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Cme08g01071 408 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cme08g01071 408 SUPERFAMILY ARM repeat 106 390 IPR016024 -
Cme08g01071 408 Pfam U-box domain 10 81 IPR003613 GO:0004842|GO:0016567
Cme08g01071 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01071 - - - csv:101207530 713.375
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme08g01071 Cme11g00070 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00269 Cme-Chr7:1749607 Cme08g01071 Cme-Chr8:7018231 9.99E-36 dispersed
Cme08g01071 Cme-Chr8:7018231 Cme11g00070 Cme-Chr11:576543 9.85E-65 dispersed
Cme08g01071 Cme-Chr8:7018231 Cme05g00240 Cme-Chr5:1752969 1.70E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1266 . . Bda04g00334 . . . . . Cmo02g00625 . Cma03g01083 Cma07g00789 Car03g00973 Car07g00775 Sed10g0492 Cpe19g00539 Cpe10g00346 Bhi03g01378 Tan03g1327 Cmetu08g0065 . Hepe04g1125 . . Cla01g01528 Cam01g1597 Cec04g1242 Cco04g1311 Clacu01g1622 Cmu01g1508 Cre04g1187 . . Cone6ag1295 . Lsi01g01136 . . Cme08g01071 . . . . . Bpe06g00274 . . . . Cmo07g00812 . . . . Cpe05g01067 . Bhi10g02332 Tan07g0873 Cmetu11g1820 . Hepe08g1253 . . Cla02g00066 Cam02g0068 Cec02g0070 Cco02g0063 Clacu02g0067 Cmu02g0066 Cre02g0405 Lsi10g00713 Csa06g02795 Chy02g01040 Cme11g00070
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
Cme04g02015 . 1 1043 U-box Gene Family AT5G15400 76.0 0.0e+00 1575.1
Cme03g02175 . 1 637 U-box Gene Family AT1G24330 65.9 2.1e-232 802.4
Cme10g00643 . 1 758 U-box Gene Family AT1G24330 58.6 3.9e-231 798.1
Cme03g02175 . 1 642 U-box Gene Family AT1G67530 66.0 4.7e-232 801.2
Cme10g00643 . 1 758 U-box Gene Family AT1G67530 57.3 2.1e-224 775.8
Cme08g00355 . 1 362 U-box Gene Family AT4G21350 62.6 2.1e-121 432.6
Cme04g01429 . 135 461 U-box Gene Family AT3G07360 54.5 1.7e-79 293.1
Cme10g01508 . 326 513 U-box Gene Family AT1G71020 72.0 5.5e-74 275.4
Cme09g01399 . 251 451 U-box Gene Family AT1G71020 53.5 8.3e-54 208.4
Cme12g00199 CCT 98 267 U-box Gene Family AT1G71020 58.4 2.8e-49 193.4
Cme10g00093 . 210 413 U-box Gene Family AT1G71020 51.7 1.5e-47 187.6
Cme11g01284 CCT 255 424 U-box Gene Family AT1G71020 55.9 2.9e-46 183.3
Cme10g01508 . 72 717 U-box Gene Family AT1G23030 55.8 1.1e-106 384.4
Cme12g00199 CCT 98 467 U-box Gene Family AT1G23030 61.2 4.8e-46 183.0
Cme11g01284 CCT 93 634 U-box Gene Family AT2G28830 51.1 2.7e-99 359.8
Cme12g00199 CCT 5 479 U-box Gene Family AT2G28830 60.0 3.6e-83 306.2
Cme11g01284 CCT 3 648 U-box Gene Family AT3G46510 65.5 2.9e-158 555.8
Cme10g00093 . 5 620 U-box Gene Family AT3G46510 58.7 6.1e-124 441.8
Cme12g00199 CCT 2 482 U-box Gene Family AT3G46510 70.9 2.1e-111 400.2
Cme10g00093 . 9 619 U-box Gene Family AT3G54850 69.1 9.6e-167 583.9
Cme11g01284 CCT 13 627 U-box Gene Family AT3G54850 57.6 9.1e-117 417.9
Cme12g00199 CCT 12 471 U-box Gene Family AT3G54850 63.1 1.3e-78 291.2
Cme11g01052 . 92 622 U-box Gene Family AT5G42340 64.9 7.0e-120 428.3
Cme08g02117 . 9 671 U-box Gene Family AT5G01830 57.7 1.0e-195 680.2
Cme12g01264 . 1 714 U-box Gene Family AT1G29340 67.4 5.9e-245 844.0
Cme06g01534 . 27 442 U-box Gene Family AT5G37490 51.6 1.4e-111 400.2
Cme08g02024 . 8 425 U-box Gene Family AT3G52450 50.3 7.7e-115 411.0
Cme04g02322 . 1 404 U-box Gene Family AT2G35930 54.1 2.2e-119 426.0
Cme05g00240 CCT,ECH 13 412 U-box Gene Family AT2G35930 52.1 3.3e-115 412.1
Cme06g01339 . 9 424 U-box Gene Family AT3G19380 64.2 7.4e-147 517.3
Cme06g01339 . 1 424 U-box Gene Family AT1G49780 64.1 2.9e-151 531.9
Cme08g01071 CCT 1 407 U-box Gene Family AT5G64660 54.9 5.3e-121 431.4
Cme08g01071 CCT 1 407 U-box Gene Family AT5G09800 51.8 6.1e-106 381.3
Cme07g00269 . 1 453 U-box Gene Family AT3G49810 63.2 3.0e-154 542.0
Cme03g02117 . 1 395 U-box Gene Family AT3G49810 65.6 2.0e-142 502.7
Cme07g00269 . 1 453 U-box Gene Family AT5G65920 62.3 1.1e-148 523.5
Cme03g02117 . 1 395 U-box Gene Family AT5G65920 66.3 4.0e-143 505.0
Cme05g02054 . 4 720 U-box Gene Family AT2G19410 50.6 1.5e-209 726.5
Cme03g01705 . 358 701 U-box Gene Family AT2G19410 53.2 1.0e-96 351.7
Cme03g01705 . 392 698 U-box Gene Family AT4G25160 52.8 9.3e-85 312.0
Cme09g00333 . 39 553 U-box Gene Family AT5G40140 55.1 6.8e-92 335.1
Cme02g01939 . 71 581 U-box Gene Family AT5G40140 51.0 4.4e-67 252.7
Cme03g01335 . 4 815 U-box Gene Family AT1G76390 60.6 7.2e-268 920.2
Cme03g01335 . 13 815 U-box Gene Family AT1G20780 61.2 2.5e-276 948.3
Cme10g00643 . 1 767 U-box Gene Family AT1G27910 63.2 3.9e-263 904.4
Cme03g02175 . 1 696 U-box Gene Family AT1G27910 63.8 5.5e-249 857.4
Cme08g00648 . 1 592 U-box Gene Family AT5G67530 74.2 2.4e-260 894.8
Cme06g00245 . 3 157 U-box Gene Family AT5G67530 52.9 3.9e-45 179.9
Cme06g00455 . 36 552 U-box Gene Family AT1G04510 74.1 1.6e-220 762.3
Cme06g00455 . 36 521 U-box Gene Family AT2G33340 73.2 1.1e-207 719.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002606 1 2 1 0 1 2 3 2 2 1 2 2 3 2 2 2 2 4 3 2 2 3 2 3 2 2 2 1 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g01071 Cme_Chr08 FPKM 33.094505 36.364292 57.449097 58.9035 15.721985 14.643635 16.251961 0.282575 0.307942 0.0