Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01072 ATGCTGAGCTCTGATGGAGATGCAGATGTTTTCTTTGACTCAGAAGATTACTTGCCATTAGAGGAGGCTTTGGTAGCTGAAGAAGCGGATTTCAGCAAGTTGGGATATGAAATATGGATGAGTGAACCTCAGAGCATTAAGAAGAGAAGGGAACGGTTTCTTCAAGAAGTTGGTTTTGTTGAATTTGCATCTTCTAGTACCTGTGCACAGGATTCAGAGATTGAATCTAGTTGTTCATCAGAGAGGATGGAATTGGAGAGACTTACAGAGTGTAGTGGAGCTGTCTCAAGCTCTGACTATACACCTAGCTGTAATGTGGAAGGAAATGATTTAGTAGTATGCCACAATGAGATGCAAAGTGCTGAATTTGACAACGAGGCAACCAATCGACTGTCTCCTGCTTCCGACTCCAGCTTCCAACGGCCCCAAGGTGAAGCTAATGTTGAAGCTTGCCAGGATGTTGATGTGGGTAAAAAGAAAATATTGGCATGGTGGAAATCATTTAAGAACAAAGCAGCAAGACGAAGGAGTATAGATTTTTCTGGGGAATCGGAATTGAATTCACCAAAATTCCAAAGTTGCAGAATGAAGGTGTACCAACACAAAAAGAGGTGTTCAGAATTTAGTGCATTGTATATGAGACAGCAGATTGGTGCACACAAGGGCTTGATTTGGACAATGAAGTTTAGTCCAGATGGTAAGTATTTAGCAAGCGGAGGAGAAGATGGAGTTGTACGCATTTGGCATGTAAGGTATGCAAATGCTTCTAGTGAGTTTTTAGCAGATGACGGAAATTATAACACCAAATCAAAAGACGGGAAGTCTAGCAGCAAACGGTTGAGATTTGCCACTGTTGTCATTCCTGAAAAGCTTTTTCAGATCGATGAGTTGCCAATACAAGAATTCCGTGGACATTCAAGTGATGTCTTGGACATAGCTTGGTCTACTTCAAACTTTCTTTTGTCATCCTCAAAGGATAAAACCGTATGCTTATGGCAAGTCGGTTCTGACGAATGTCTCGGTGTTTTCCACCACAAAAATTATGTGACTTGTATCCAATTCAATCCAATGGATGAAAACTTCTTTGTCAGCGGGTCAATTGATGGCAAAATCCGGATATGGGGTGTCAAGAAGCAGCGTGTAGTTGATTGGGCCGATATCCGAGATGTAATTACTGCCATATCTTATCGACCAGATGGGAAGGGATTTGCTGTTGGTTCTATTACTGGCACTTGTCGCTTCTATGAAGCATCAGGTGATTATCTTCATCTGGATGCACAGATCAACGTTCAAGGTAGAAAAAAAGCCTCGGGCAAAAGGATCACTGGCATTCAGTTTTTCCGGGAAAATTCTCAAAGAGTGATGATAACTTCAGAAGACTCTAAAGTACGGATATTTGAAGGCACGGAGATCGTCCGCAAATACCAAGGTCTGCCAAAGTCGGGGAGTCAGATGTCTGCTTCCTTTACGAAAAGTGGAAAACATATAGTATCGGTCGGAGAGGACTCTCGTGTATATATGTGGAGCTACGATAGCCTTTGCCTTCCGTCGACAAAAGAAACAAAATCTCAGCAGTCTTGTGAGCATTTCTTTTCTGATGGTGTGTCTGTTGCTATACCATGGCCTGGCATTGGAACTGAACCAAAGTGCTTCAGTAACAACCAACCACAGTTTTCATATAGAAAGAATTACCAAAGGGCTGCTTCTTGGACAAGAGATACGGACCGGTTTTCACTCAGTAATTGGTTCTCTGCCGATGGTCTATTCCGAGGATCTGCAACATGGCCAGAAGAGAGACTACCTCTCTGGGATTTACCTATTGCAGATGATGAAGATGGAAACCTACAACACCATGATTGTCATCAAAAGAAACTAAATAGTCATTGTGATGCCCACAACGACGGATCTCAACTCGAAACATGGGGCCTTGTGATCGTCGTGGCTGGATTAGATGGAACTATAAAGACATTCCACAACTATGGATTGCCTATCAAGCTTTAG 2001 42.48 MLSSDGDADVFFDSEDYLPLEEALVAEEADFSKLGYEIWMSEPQSIKKRRERFLQEVGFVEFASSSTCAQDSEIESSCSSERMELERLTECSGAVSSSDYTPSCNVEGNDLVVCHNEMQSAEFDNEATNRLSPASDSSFQRPQGEANVEACQDVDVGKKKILAWWKSFKNKAARRRSIDFSGESELNSPKFQSCRMKVYQHKKRCSEFSALYMRQQIGAHKGLIWTMKFSPDGKYLASGGEDGVVRIWHVRYANASSEFLADDGNYNTKSKDGKSSSKRLRFATVVIPEKLFQIDELPIQEFRGHSSDVLDIAWSTSNFLLSSSKDKTVCLWQVGSDECLGVFHHKNYVTCIQFNPMDENFFVSGSIDGKIRIWGVKKQRVVDWADIRDVITAISYRPDGKGFAVGSITGTCRFYEASGDYLHLDAQINVQGRKKASGKRITGIQFFRENSQRVMITSEDSKVRIFEGTEIVRKYQGLPKSGSQMSASFTKSGKHIVSVGEDSRVYMWSYDSLCLPSTKETKSQQSCEHFFSDGVSVAIPWPGIGTEPKCFSNNQPQFSYRKNYQRAASWTRDTDRFSLSNWFSADGLFRGSATWPEERLPLWDLPIADDEDGNLQHHDCHQKKLNSHCDAHNDGSQLETWGLVIVVAGLDGTIKTFHNYGLPIKL 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7044027 7051026 + MELO3C008041.2.1 Cme08g01072 335335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01072 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 251 - -
Cme08g01072 666 Pfam WD domain, G-beta repeat 218 248 IPR001680 GO:0005515
Cme08g01072 666 Pfam WD domain, G-beta repeat 298 332 IPR001680 GO:0005515
Cme08g01072 666 Pfam WD domain, G-beta repeat 338 374 IPR001680 GO:0005515
Cme08g01072 666 SUPERFAMILY WD40 repeat-like 212 656 IPR036322 GO:0005515
Cme08g01072 666 PANTHER WD REPEAT DOMAIN 44 5 666 IPR040324 -
Cme08g01072 666 Gene3D - 202 533 IPR015943 GO:0005515
Cme08g01072 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515
Cme08g01072 666 SMART WD40_4 336 375 IPR001680 GO:0005515
Cme08g01072 666 SMART WD40_4 427 467 IPR001680 GO:0005515
Cme08g01072 666 SMART WD40_4 210 249 IPR001680 GO:0005515
Cme08g01072 666 SMART WD40_4 377 416 IPR001680 GO:0005515
Cme08g01072 666 SMART WD40_4 468 509 IPR001680 GO:0005515
Cme08g01072 666 SMART WD40_4 622 658 IPR001680 GO:0005515
Cme08g01072 666 SMART WD40_4 295 333 IPR001680 GO:0005515
Cme08g01072 666 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Cme08g01072 666 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Cme08g01072 666 PRINTS G protein beta WD-40 repeat signature 362 376 IPR020472 -
Cme08g01072 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 384 IPR001680 GO:0005515
Cme08g01072 666 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 666 - -
Cme08g01072 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 342 IPR001680 GO:0005515
Cme08g01072 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 334 - -
Cme08g01072 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01072 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101207772 1249.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01072 Cme-Chr8:7044027 Cme09g02004 Cme-Chr9:23810545 8.38E-131 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g01072 Cme_Chr08 FPKM 6.185012 5.729404 8.593347 8.291337 10.384382 9.94393 11.602631 5.655616 5.405196 6.11796