Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g01078 | ATGGACCCCCATCACCTCTCAAACCCTCCTCCTCATCTCGATCGCTCCGCCATGGATGACCACCATATCCTTCACCACGTTCATGACCTTGATTCTATTTGGCCGTCGTTTTTGCCTTTTCAACTCTCTGATCATCACGATCAACAACTCCCCACCTCCTCCACCCATTTTCTGATAGGCTACAGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAGCCAGAAGAAGAGTTAGGTGCGATGAAGGAGATGATGTATAAGATTGCAGCAATGCAGCCGGTGGACATCGACCCTTCAACTATTCGGAAGCCTAAGCGACGAAACGTGCGGATTAGCGATGACCCCCAAAGCATCGCAGCTCGTCTTCGACGAGAGAGGATTAGCGAAAAGATTAGGATTCTTCAAAGGCTCGTGCCTGGAGGGACAAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTTAAGTTCTTGAAGAGACAAATCCGGTTGCTACAGTCAAGTCAACCGCCGCAACAGCCAAGCACCAGCGGTGGAGCTGCCACCGCTGCCGGCGGAGGAGGGTGGCATTTTCCATTGAATAAGGCTAATGGTTCAACCTCTTCGTCCACTTCCATGGAAAATACTCCTACCATTACACCAACAGGATGGTGA | 663 | 50.08 | MDPHHLSNPPPHLDRSAMDDHHILHHVHDLDSIWPSFLPFQLSDHHDQQLPTSSTHFLIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPSTSGGAATAAGGGGWHFPLNKANGSTSSSTSMENTPTITPTGW | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7087227 | 7088204 | + | MELO3C008047.2.1 | Cme08g01078 | 335341 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g01078 | 220 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 19 | 213 | - | - | |
Cme08g01078 | 220 | Gene3D | - | 115 | 178 | IPR036638 | GO:0046983 | |
Cme08g01078 | 220 | MobiDBLite | consensus disorder prediction | 197 | 220 | - | - | |
Cme08g01078 | 220 | CDD | bHLH_AtIND_like | 113 | 168 | - | - | |
Cme08g01078 | 220 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 112 | 161 | IPR011598 | GO:0046983 | |
Cme08g01078 | 220 | Pfam | Helix-loop-helix DNA-binding domain | 121 | 161 | IPR011598 | GO:0046983 | |
Cme08g01078 | 220 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 19 | 213 | IPR045843 | GO:0003700|GO:0006355 | |
Cme08g01078 | 220 | MobiDBLite | consensus disorder prediction | 170 | 220 | - | - | |
Cme08g01078 | 220 | SMART | finulus | 118 | 167 | IPR011598 | GO:0046983 | |
Cme08g01078 | 220 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 117 | 171 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00157 | Cme-Chr8:1116278 | Cme08g01078 | Cme-Chr8:7087227 | 1.52E-06 | dispersed | |
Cme08g01078 | Cme-Chr8:7087227 | Cme11g00295 | Cme-Chr11:3162208 | 7.06E-47 | dispersed | |
Cme12g01026 | Cme-Chr12:17884010 | Cme08g01078 | Cme-Chr8:7087227 | 5.76E-13 | dispersed | |
Cme08g01078 | Cme-Chr8:7087227 | Cme07g00345 | Cme-Chr7:2214088 | 1.94E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41839 | PF00010 | HLH | 1.30E-06 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g01078 | - | - | csv:101222266 | 394.43 |