Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01078 ATGGACCCCCATCACCTCTCAAACCCTCCTCCTCATCTCGATCGCTCCGCCATGGATGACCACCATATCCTTCACCACGTTCATGACCTTGATTCTATTTGGCCGTCGTTTTTGCCTTTTCAACTCTCTGATCATCACGATCAACAACTCCCCACCTCCTCCACCCATTTTCTGATAGGCTACAGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAGCCAGAAGAAGAGTTAGGTGCGATGAAGGAGATGATGTATAAGATTGCAGCAATGCAGCCGGTGGACATCGACCCTTCAACTATTCGGAAGCCTAAGCGACGAAACGTGCGGATTAGCGATGACCCCCAAAGCATCGCAGCTCGTCTTCGACGAGAGAGGATTAGCGAAAAGATTAGGATTCTTCAAAGGCTCGTGCCTGGAGGGACAAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTTAAGTTCTTGAAGAGACAAATCCGGTTGCTACAGTCAAGTCAACCGCCGCAACAGCCAAGCACCAGCGGTGGAGCTGCCACCGCTGCCGGCGGAGGAGGGTGGCATTTTCCATTGAATAAGGCTAATGGTTCAACCTCTTCGTCCACTTCCATGGAAAATACTCCTACCATTACACCAACAGGATGGTGA 663 50.08 MDPHHLSNPPPHLDRSAMDDHHILHHVHDLDSIWPSFLPFQLSDHHDQQLPTSSTHFLIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPSTSGGAATAAGGGGWHFPLNKANGSTSSSTSMENTPTITPTGW 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7087227 7088204 + MELO3C008047.2.1 Cme08g01078 335341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01078 220 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 213 - -
Cme08g01078 220 Gene3D - 115 178 IPR036638 GO:0046983
Cme08g01078 220 MobiDBLite consensus disorder prediction 197 220 - -
Cme08g01078 220 CDD bHLH_AtIND_like 113 168 - -
Cme08g01078 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Cme08g01078 220 Pfam Helix-loop-helix DNA-binding domain 121 161 IPR011598 GO:0046983
Cme08g01078 220 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 213 IPR045843 GO:0003700|GO:0006355
Cme08g01078 220 MobiDBLite consensus disorder prediction 170 220 - -
Cme08g01078 220 SMART finulus 118 167 IPR011598 GO:0046983
Cme08g01078 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 171 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00157 Cme-Chr8:1116278 Cme08g01078 Cme-Chr8:7087227 1.52E-06 dispersed
Cme08g01078 Cme-Chr8:7087227 Cme11g00295 Cme-Chr11:3162208 7.06E-47 dispersed
Cme12g01026 Cme-Chr12:17884010 Cme08g01078 Cme-Chr8:7087227 5.76E-13 dispersed
Cme08g01078 Cme-Chr8:7087227 Cme07g00345 Cme-Chr7:2214088 1.94E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41839 PF00010 HLH 1.30E-06 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01078 - - csv:101222266 394.43