Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01088 ATGCCTCTTGGGTGGGTTAAAAAATTGAGTAGAAATAAGGACCATCACAATCAAAATCACCCCACTTCTTCTCTCAACCTCTTCAAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCCCAAAACTCAACCGAAGAACCCCATCATCACCCACAAACCCAAGAGCTTTGATGAGGTTTCTGCTGTGATTTTCTCTCGTAATTCTCCCAGGTCTAGCAGGGATCTGGGCTCTTCTGGTGCTGCCTCTTCTGGGTTTTCTGGTTTTGACTCTGATAGTGGGGATAAGAGTCTTCCTCTTCCTCGACCTGCTACTTCTGGCCTTGGGATTGATCATGGAGCTGGGAATGGATCTGGGTCCAGTTCGGTTTCCAGTGATATCTCTTCTGGCTCTTCAGATGATCAACCATCTGCTCAAGAACAGCTTCAATTTGGAGCTTACAGAGGATTTGCTGATAACAGAATCGAGACAAGAGCAAGAAGTCCAGGTCCAGGATCAAAAGGACCCACTAGTCCAACATCGCCTCTCAACCCACGTTTCTGTGGCATGAGTCTCGAGTCTCCTACAACTCATAAGCTGCCGCTTCCTCCAAGTGCTCCCACCAGCCCTTCTTCCTTGACCAGCATGAGAGCTACCAATATTGGTGATAACAACGCAGCTATACAATCGAAATGGAAGAAAGGAAGGCTTCTAGGGAGAGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATAAGTGATGACTCAACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTGTGCTCAGTCAGCTGTCGCATCCGAACATTGTCCGGTACTATGGTAGTGAAATGGGTGAAGAGTCACTCTCAGTCTACTTAGAATACATTTCCGGGGGATCAATTCACAAATTACTTCAGGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGGAAGATTCTTTCTGGGCTTGCTTATTTGCATGGGAGAAATACAGTGCATAGGGACATCAAAGGGGCAAATATCTTAGTAGATCCGAAAGGCGAGGTCAAGTTGGTGGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGATGCTTTCCTTCAAAGGCAGTCCTTATTGGATGGCCCCGGAGGTTGTGATGAATACAAATGGCTACAGTCTTGCTGTAGACATTTGGAGTTTAGGATGTACTGTTCTTGAAATGGCAACATCTAAACCGCCTTGGAGCAAATACGAAGGGGTGGCTGCCATTTTCAAAATTGGGAATAGTAAAGACATTCCCGAAATTCCAGACTATCTCTCCAGTGATGCTAGAAGTTTTGTGCAATTATGTTTGCAACGGGATCCTTCCGCCCGTCCTTCTGCTGCAGAACTACTGGACCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTATCTGTGGATGCATTCCCCTTTAGCTTCGATGGAATCCAAACTTCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGTGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGTCCTAGGGGAAATGGAAGATTGATCACATCCTTGCCTGTCTCTCCATGTTCAAGTCCATTACGGTCGTATGGCCCCACGCACCAGAGCTGTTATCTTTCACCACCGCACACGTCTTACATGGGGGTGGGTCAAAGTGGATACAATTTGAACGAATACGCATATAACACGAGACCAAACACATTGTTCACCCTTGATCCTTTGCGAGAGTCATCTCTATTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGACCTCTTTGA 1878 45.05 MPLGWVKKLSRNKDHHNQNHPTSSLNLFKSSSSSSSSSSPKTQPKNPIITHKPKSFDEVSAVIFSRNSPRSSRDLGSSGAASSGFSGFDSDSGDKSLPLPRPATSGLGIDHGAGNGSGSSSVSSDISSGSSDDQPSAQEQLQFGAYRGFADNRIETRARSPGPGSKGPTSPTSPLNPRFCGMSLESPTTHKLPLPPSAPTSPSSLTSMRATNIGDNNAAIQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITVLSQLSHPNIVRYYGSEMGEESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLVDFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSKDIPEIPDYLSSDARSFVQLCLQRDPSARPSAAELLDHPFVQDAVTPRASDVNLSVDAFPFSFDGIQTSPLLDRHPNRKSISICDGDYVTNPTFSSRAPSPRGNGRLITSLPVSPCSSPLRSYGPTHQSCYLSPPHTSYMGVGQSGYNLNEYAYNTRPNTLFTLDPLRESSLLKVQTHLGSPRRPL 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7195247 7200103 + MELO3C008058.2.1 Cme08g01088 335351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01088 625 MobiDBLite consensus disorder prediction 61 90 - -
Cme08g01088 625 Gene3D Transferase(Phosphotransferase) domain 1 220 497 - -
Cme08g01088 625 MobiDBLite consensus disorder prediction 163 183 - -
Cme08g01088 625 ProSitePatterns Protein kinases ATP-binding region signature. 230 253 IPR017441 GO:0005524
Cme08g01088 625 MobiDBLite consensus disorder prediction 19 49 - -
Cme08g01088 625 SMART serkin_6 224 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01088 625 MobiDBLite consensus disorder prediction 114 137 - -
Cme08g01088 625 ProSiteProfiles Protein kinase domain profile. 224 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01088 625 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 3 1 602 - -
Cme08g01088 625 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 602 - -
Cme08g01088 625 Pfam Protein kinase domain 225 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g01088 625 SUPERFAMILY Protein kinase-like (PK-like) 222 565 IPR011009 -
Cme08g01088 625 MobiDBLite consensus disorder prediction 155 205 - -
Cme08g01088 625 CDD STKc_MEKK1_plant 223 480 - -
Cme08g01088 625 MobiDBLite consensus disorder prediction 1 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01657 Cme-Chr5:25692530 Cme08g01088 Cme-Chr8:7195247 2.55E-88 dispersed
Cme08g01088 Cme-Chr8:7195247 Cme09g01564 Cme-Chr9:20609817 5.95E-147 dispersed
Cme09g00387 Cme-Chr9:3475453 Cme08g01088 Cme-Chr8:7195247 4.78E-41 dispersed
Cme08g01088 Cme-Chr8:7195247 Cme08g00551 Cme-Chr8:3459611 9.27E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65091 PF00069 Pkinase 1.70E-72 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01088 K04421 - csv:101203907 1128.62