Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01140 ATGGCCGATTCCACCACCAGTAGGAAGAAACCACTCAGTTTGAACGATCGTCATTACCGCCTCCTTCAGGATCTTTCTGCTCCTCCAAAACCCTCTTTGGCAACCGCTGCGGATGATAGAGAAGGAGACGAAGATGTAAAACCTTCGAGAATCGGACTTGAGAATCAACATCGCTTCAGTGAAGTATCGTCTAATGTTGACGAATTTAATGATGATAAAGTTCTGCAGTCTTCAGGTGTTAATGTCGAAGAAAAGACGATGAAGGTTAAGATCAATGGCCGACGCCGTCTGTGCAAACTCTCGTCTCGAGAAGATGATTGCTTGGACAATACAGAGGGGTTCCATTTCAATGCACCCAATTTTTCTGGTATTACGGATTTCGATTCCCCTTCTCCGCCACCTCCACTACCCGTTGAAAATAGCGTTAACAAGGGAAGTGAAATCAGGGATATCCTGAATGACTTGAGCACGAGGCTTGAGCTTTTGTCTGTCGAGAAAAGGCGAGAAAAGCCAAAAAAAATTGATTATCTAGAAGACTACTCGGCTTCTTACGGTGGAAAAGGGTACGGGGAAGCAAATAAAGCCGATGATCGTGAGGTTGATAGTCTGAAGTTCTCCACTAAAACATCTAATTCCTTGTTTGGTGAAAGTGGGAAAGTAGAAAAAGTTGTCAAGACTCTGAACGTCGGTGGGAGTGGCGAGTACGGAGAACAAATTCTTCCAAATAAGGTGAGGGTAGATGTGTTTGACGAGGGAATTCATGAAGTTGATACGTGCAGTAAAGATAGTGAACAACTTCTGAATTTAGAGCATGCAAGTAATAAACATGACAAAGGACGAGATAAATTCAGGAGTCAGGATGTCCAAAAAACGTACAATTCCCTAGGAAAAAGTCCTGTGTTGATAGATGAAAGAGAGGTAGAGGATGAGGATGATTGCGTAGTTCTGAATCATGAAACAAGGGATTTTAATGAAGTAAGAAGGCAACATGGCAAATATGAAGAGAAGGATAATGGTTCTGATGGGCTTGACATGTTTGATAAGTCTGGCGAGGATTTTATCTTGGAGGGGAAAAGCTCCACTGGTCACAATTCTACTTTCAAATTGCAAGGTAGAATTGCAACGATGCTGTATCCACATCAACGTGATGGGTTGCAGTGGCTGTGGTCTCTACATTGTCAGGGCAAGGGCGGAATTTTAGGTGATGACATGGGTTTAGGGAAAACAATGCAGATTTGTGGCTTTCTAGCTGGTCTTTTTTATTCGCGTTTAATAAAGAGGGTCTTGGTTGTGGCTCCTAAAACGCTCCTGCCCCATTGGATTAAAGAGTTATCTGTTGTGGGTCTTTCTGAGAAGACGAGAGAATACTATGGGACGTCAGCTAAACTTCGGCAATATGAGCTTAATTATATTCTCCAGGATAAAGGTGTTCTTCTTACGACTTATGATATTGTGAGGAATAATTCAAAGTCTTTGCAAGGAAACTGCTTCTCTGAAGATGAGGAAACTGAGGATGGAACAACATGGGATTACATGATCCTTGATGAGGGTCATCTTATAAAGAATCCTAGCACTCAAAGAGCCAAAAGTTTGCTTGATATACCCAGTGCTCATCGCATAATTATAAGCGGCACACCATTGCAAAACAATCTGAAGGAACTGTGGGCCCTGTTTAACTTTTGCTGTCCTGACCTATTGGGTGACAAGCACTGGGCGGATGGGGGAGGAACTCCCCAATCATCGCATAAATGCTCGATGGCCGGCATTGCTAACGCCAAACTCTTGCACAAAAAAGCTCCACATGTTTTGAGCATACTGACAATACCAAGAAAGGTGGTCAAGGTCTTCTCGCCTTTCAACAAAGCAAGCAACAAAAAGGGCCAACAAGCGAAGTCCTCCTCTAACAAGCCTATCAACACCGTGTTAACTCGGTTTAAAGAACACTATGAGTCAGCAATTCTTCGTGGAAATGACAAAAAGGCTTCTGAAAGAGATAAGCGGATCGGTTCAGTGGTTGCAAAGGGTTTAAGGGAACGCATCCAACCCTACTTTTTGCGTCGTATGAAGAGTGAAGTGTTTAATGAGGATAATGATCAAGCTGCTACCAAACTCTCTAAAAAGAATGACATTATTGTTTGGCTCAGACTGACTAGTTGTCAGCGACAACTTTATGAAGCTTTCTTGAAGAGTGATTTGGCACTTTCTGCATTCGATGGCTCAGTATTGGCTGCCATTACGATTCTTAAGAAGATATGCGATCATCCACTTCTTTTGACCAAAAGAGCTGCTGAAGAGGTATTGGAAGGAATGGAAACAGTGTTAAGCCCAGAAGATGCTGGTGTAGCAGAAAAGCTGGCAAAACAATTAGCAGATGTAGTTGATAGGGACTTTTCTGAAGTGTATGATGACAATGTCTCTTGCAAAATATCCTTCATAATGTCTTTATTGGATAATTTGGTTCCGAAGGGGCATAGTGTTCTTATCTTTTCTCAAACTCGCAAGATGCTCAATCTTCTCGAGAAATCACTGTTATCCAATGACTATGAGTTCTTGCGCATTGATGGTACTACAAAAGCCATGGACCGAGTGAAGATTGTAAATGATTTTCAAGAAGGTAGAGGAGCTTCTATATTTCTCTTGACATCTCAAGTCGGTGGTCTAGGTCTTACACTTACCCGAGCTGATCGTGTAATTGTAGTAGATCCAGCTTGGAATCCAAGTACTGATAATCAAAGCGTTGATCGAGCATACAGAATTGGGCAAAAGAAAGATGTTATAGTGTATAGATTAATGACATGTGGGACTGTTGAAGAAAAGATCTACAGAAAACAGGTTTATAAAGGGGGATTGTTTAAAACAGCAACAGAGCACAAAGAACAGATACGGTACTTTAGTCAACAGGATCTTCGGGAGCTTTTTAGTCTTCCAGAAGAGGGATTTGATACATCTGTCACACAACAACAAATGCATGAGGAACATGATCAACAACTTACAATGGATGAATCTTTGAGAAGCCACATAAAGTTTCTGGAGACTCAAGGTATTGCAGGAGTTAGTCACCACAATTTGCTGTTTTCTAAGACAGCTCCAGAGCCGGTGTATGCATTGGAGGAAGAAGACACGTCGTTCAGGAGGAATAGAGAGTTTGGATTCAGAGACAGACCAACATCAAGTTCTTCATCCAATCATGATATAAACGGAGCAAGGTATGCTTTCAACCCAAAGGATGTGATGTTAAATAGATCTATCACAAATTCAAGCAGTCCAGGCAAACCTACGGTAAAGGAAATCGAATATAGAATCAATCGACTGTCTCAAACTCTAGAAAATAAGGTTCTTATCTCAAGATTACCAGACAGGGGGGAAAGAATTCATAAGCAAATTGATGAATTGAATTTACAACTTTCTGAATTAAGAAGAAAAGAACATGAAAGTGAAGTCATCGACATCACTGACGAGTTTCAGAAGATTTTGAATGTATAG 3483 41.37 MADSTTSRKKPLSLNDRHYRLLQDLSAPPKPSLATAADDREGDEDVKPSRIGLENQHRFSEVSSNVDEFNDDKVLQSSGVNVEEKTMKVKINGRRRLCKLSSREDDCLDNTEGFHFNAPNFSGITDFDSPSPPPPLPVENSVNKGSEIRDILNDLSTRLELLSVEKRREKPKKIDYLEDYSASYGGKGYGEANKADDREVDSLKFSTKTSNSLFGESGKVEKVVKTLNVGGSGEYGEQILPNKVRVDVFDEGIHEVDTCSKDSEQLLNLEHASNKHDKGRDKFRSQDVQKTYNSLGKSPVLIDEREVEDEDDCVVLNHETRDFNEVRRQHGKYEEKDNGSDGLDMFDKSGEDFILEGKSSTGHNSTFKLQGRIATMLYPHQRDGLQWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFYSRLIKRVLVVAPKTLLPHWIKELSVVGLSEKTREYYGTSAKLRQYELNYILQDKGVLLTTYDIVRNNSKSLQGNCFSEDEETEDGTTWDYMILDEGHLIKNPSTQRAKSLLDIPSAHRIIISGTPLQNNLKELWALFNFCCPDLLGDKHWADGGGTPQSSHKCSMAGIANAKLLHKKAPHVLSILTIPRKVVKVFSPFNKASNKKGQQAKSSSNKPINTVLTRFKEHYESAILRGNDKKASERDKRIGSVVAKGLRERIQPYFLRRMKSEVFNEDNDQAATKLSKKNDIIVWLRLTSCQRQLYEAFLKSDLALSAFDGSVLAAITILKKICDHPLLLTKRAAEEVLEGMETVLSPEDAGVAEKLAKQLADVVDRDFSEVYDDNVSCKISFIMSLLDNLVPKGHSVLIFSQTRKMLNLLEKSLLSNDYEFLRIDGTTKAMDRVKIVNDFQEGRGASIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPEEGFDTSVTQQQMHEEHDQQLTMDESLRSHIKFLETQGIAGVSHHNLLFSKTAPEPVYALEEEDTSFRRNREFGFRDRPTSSSSSNHDINGARYAFNPKDVMLNRSITNSSSPGKPTVKEIEYRINRLSQTLENKVLISRLPDRGERIHKQIDELNLQLSELRRKEHESEVIDITDEFQKILNV 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8033090 8044537 - MELO3C024599.2.1 Cme08g01140 335403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01140 1160 PANTHER SNF2/RAD54 FAMILY MEMBER 343 569 - -
Cme08g01140 1160 PANTHER SNF2/RAD54 FAMILY MEMBER 643 1032 - -
Cme08g01140 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 687 IPR027417 -
Cme08g01140 1160 CDD SF2_C_SNF 805 931 - -
Cme08g01140 1160 Gene3D - 356 604 IPR038718 -
Cme08g01140 1160 SMART helicmild6 837 920 IPR001650 -
Cme08g01140 1160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 811 970 IPR001650 -
Cme08g01140 1160 Pfam Helicase conserved C-terminal domain 808 920 IPR001650 -
Cme08g01140 1160 Coils Coil 1121 1141 - -
Cme08g01140 1160 PANTHER OS04G0692700 PROTEIN 343 569 - -
Cme08g01140 1160 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 564 IPR014001 -
Cme08g01140 1160 Pfam SNF2-related domain 380 579 IPR000330 GO:0005524|GO:0140658
Cme08g01140 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 701 996 IPR027417 -
Cme08g01140 1160 MobiDBLite consensus disorder prediction 22 56 - -
Cme08g01140 1160 MobiDBLite consensus disorder prediction 36 54 - -
Cme08g01140 1160 SMART ultradead3 373 571 IPR014001 -
Cme08g01140 1160 Pfam SNF2-related domain 643 757 IPR000330 GO:0005524|GO:0140658
Cme08g01140 1160 Gene3D - 706 1008 IPR027417 -
Cme08g01140 1160 PANTHER OS04G0692700 PROTEIN 643 1032 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01140 K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-] - csv:101213923 1042.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00988 Cme-Chr4:13398655 Cme08g01140 Cme-Chr8:8033090 3.76E-90 dispersed
Cme08g01140 Cme-Chr8:8033090 Cme06g01324 Cme-Chr6:11146347 6.38E-21 dispersed
Cme12g00548 Cme-Chr12:9635020 Cme08g01140 Cme-Chr8:8033090 3.16E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012490 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41842 PF00176 SNF2_N 6.90E-41 CL0023 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g01140 Cme_Chr08 FPKM 106.425758 109.310577 131.532761 138.250122 187.651932 185.101837 179.179901 252.376465 259.607697 245.088104