Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01142 ATGAACAACGGCAGCGCTCGGAAAAGTCGACCGCCCCCTCAGCACCCATCGCCGGCTCCACCGCCAAAGCACCAGGCACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGACAATCTTCTCGACGAGGACGCTCTCATCCTCCGCGACATTGAGGAGCGTCAGGCCCTTGCTTCCCGGATTTCGAAATGGGCACGTCCACCTCTTTCCCAGGATTACCTGTCCCAGTCGAAGAGCATCGTGTTTCAGCAGTTGGAAATTGACTATGTGATCGGGGAAAGTCACAAGGAACTGTTGCCGAATTTGTCTGGCCCAGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGGACATAGTGTATGTTGTCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGTCCTTCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTCGAGGCTAGAATGAAGGAGGTAAATAGAAACAGTAAAGCACCTAGCTTCGTGCGTCGCATTGAGTTGGTCCAAAGGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAATCGTTTCTTAAAATTGTAGTTGCACTCCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCATACAAATTGAGGGCTTTGGTATGAAAAGCTTCATGACGTATGAAAGCAACGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTTGGAAAGTACAAGAAAACTGTTAGAAGTTCATCATATTGCCAATTGGAGTTTGATTGCTTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGAACCAACCTTTTATTCGGAATGTCATGACCCTTAACTCTTGCTCTCCTATTGCGGGTGTTGATGTCTTATCATTTGATACAGAACGTGATGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGTTGACCCTGATATAATAATTGGATACAACATCTGCAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTGAAAATACCAGAATTTCCATTATTGGGTCGTATCAGGAATAGCAAAGTCCGTGTCAAAGATACAACTTTTTCTTCAAGACAACTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTATGCAACGAGATTATAAATTAAGTTCATACTCGTTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCGGAAACAAGGAGACGTCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTCCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAAGCAAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCCTCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGACGCTCGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTGGAAGAACTATTGACTGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGACCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCGCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCCACTGTTGGTCAGTTGCCTTGTTTAGAAATATCATCAAGTGTGACAAGCTATGGCCGGCAAATGATTGAACACACAAAGAAGCTTGTGGAGGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCCGTTATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCAATGGTCTTGGGAAGGGAAGCAGCTGAGTATATCAGTGGTACTTTCATAAAACCTATCAAGCTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAACCCAAACAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGACAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATCGATAGAGATGTTCCTGGGGCAGTCCAATATGTGAAGAACACAATTTCAGATCTGCTTATGAACCGTGTGGATCTATCACTCTTGGTTATCACTAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACTGCTCCAAATGTTGGCGATCGTGTACCTTATGTGATCATTAAAGCAGCAAAAGGTGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGTATACCGATAGACCCTCAGTATTATCTTGAGAATCAGATCAGCAAGCCGCTTCTACGAATTTTTGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCATCAAACGGTGGTATAATGAAATTTGCTAAAAAACAGCTTACCTGCATTGGCTGCAAGGCTCTTCTAGGCAAGGCAGACAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCTGAACTTTACTGCAAAGCGGTTGCAAATGTGTCTGATCTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCTCTTCACCAAGATGTCCTCTGTACGAGTCGAGACTGTCCTATATTTTATAGAAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCAATTGGAACGTTGGAATTTCTAA 3261 42.84 MNNGSARKSRPPPQHPSPAPPPKHQALSQEEDFVDEDVFLDDNLLDEDALILRDIEERQALASRISKWARPPLSQDYLSQSKSIVFQQLEIDYVIGESHKELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPSGMGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGENQPFIRNVMTLNSCSPIAGVDVLSFDTERDVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIPEFPLLGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMVLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNGGIMKFAKKQLTCIGCKALLGKADKTLCSHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQQLERWNF 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8057119 8078114 + MELO3C024596.2.1 Cme08g01142 335405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01142 1086 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cme08g01142 1086 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cme08g01142 1086 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cme08g01142 1086 Pfam DNA polymerase family B, exonuclease domain 119 462 IPR006133 -
Cme08g01142 1086 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Cme08g01142 1086 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Cme08g01142 1086 CDD POLBc_delta 567 960 - -
Cme08g01142 1086 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166|GO:0003676
Cme08g01142 1086 CDD DNA_polB_delta_exo 290 518 - -
Cme08g01142 1086 Gene3D Palm domain of DNA polymerase 567 797 IPR023211 -
Cme08g01142 1086 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 82 1086 - -
Cme08g01142 1086 SMART polmehr3 293 752 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cme08g01142 1086 TIGRFAM pol2: DNA polymerase (pol2) 352 957 - -
Cme08g01142 1086 Gene3D - 294 512 IPR036397 GO:0003676
Cme08g01142 1086 Gene3D Helix hairpin bin 641 693 - -
Cme08g01142 1086 Gene3D DNA Polymerase, chain B, domain 1 89 266 - -
Cme08g01142 1086 MobiDBLite consensus disorder prediction 1 32 - -
Cme08g01142 1086 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Cme08g01142 1086 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 82 1086 - -
Cme08g01142 1086 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166|GO:0003677
Cme08g01142 1086 Gene3D - 814 969 IPR042087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01615 Cme-Chr5:25274149 Cme08g01142 Cme-Chr8:8057119 4.68E-94 dispersed
Cme08g01142 Cme-Chr8:8057119 Cme11g00335 Cme-Chr11:3482330 2.65E-49 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01142 K02327 - csv:101219332 2097.78