Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01142 ATGAACAACGGCAGCGCTCGGAAAAGTCGACCGCCCCCTCAGCACCCATCGCCGGCTCCACCGCCAAAGCACCAGGCACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGACAATCTTCTCGACGAGGACGCTCTCATCCTCCGCGACATTGAGGAGCGTCAGGCCCTTGCTTCCCGGATTTCGAAATGGGCACGTCCACCTCTTTCCCAGGATTACCTGTCCCAGTCGAAGAGCATCGTGTTTCAGCAGTTGGAAATTGACTATGTGATCGGGGAAAGTCACAAGGAACTGTTGCCGAATTTGTCTGGCCCAGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGGACATAGTGTATGTTGTCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGTCCTTCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTCGAGGCTAGAATGAAGGAGGTAAATAGAAACAGTAAAGCACCTAGCTTCGTGCGTCGCATTGAGTTGGTCCAAAGGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAATCGTTTCTTAAAATTGTAGTTGCACTCCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCATACAAATTGAGGGCTTTGGTATGAAAAGCTTCATGACGTATGAAAGCAACGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTTGGAAAGTACAAGAAAACTGTTAGAAGTTCATCATATTGCCAATTGGAGTTTGATTGCTTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGAACCAACCTTTTATTCGGAATGTCATGACCCTTAACTCTTGCTCTCCTATTGCGGGTGTTGATGTCTTATCATTTGATACAGAACGTGATGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGTTGACCCTGATATAATAATTGGATACAACATCTGCAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTGAAAATACCAGAATTTCCATTATTGGGTCGTATCAGGAATAGCAAAGTCCGTGTCAAAGATACAACTTTTTCTTCAAGACAACTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTATGCAACGAGATTATAAATTAAGTTCATACTCGTTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCGGAAACAAGGAGACGTCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTCCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAAGCAAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCCTCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGACGCTCGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTGGAAGAACTATTGACTGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGACCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCGCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCCACTGTTGGTCAGTTGCCTTGTTTAGAAATATCATCAAGTGTGACAAGCTATGGCCGGCAAATGATTGAACACACAAAGAAGCTTGTGGAGGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCCGTTATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCAATGGTCTTGGGAAGGGAAGCAGCTGAGTATATCAGTGGTACTTTCATAAAACCTATCAAGCTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAACCCAAACAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGACAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATCGATAGAGATGTTCCTGGGGCAGTCCAATATGTGAAGAACACAATTTCAGATCTGCTTATGAACCGTGTGGATCTATCACTCTTGGTTATCACTAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACTGCTCCAAATGTTGGCGATCGTGTACCTTATGTGATCATTAAAGCAGCAAAAGGTGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGTATACCGATAGACCCTCAGTATTATCTTGAGAATCAGATCAGCAAGCCGCTTCTACGAATTTTTGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCATCAAACGGTGGTATAATGAAATTTGCTAAAAAACAGCTTACCTGCATTGGCTGCAAGGCTCTTCTAGGCAAGGCAGACAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCTGAACTTTACTGCAAAGCGGTTGCAAATGTGTCTGATCTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCTCTTCACCAAGATGTCCTCTGTACGAGTCGAGACTGTCCTATATTTTATAGAAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCAATTGGAACGTTGGAATTTCTAA 3261 42.84 MNNGSARKSRPPPQHPSPAPPPKHQALSQEEDFVDEDVFLDDNLLDEDALILRDIEERQALASRISKWARPPLSQDYLSQSKSIVFQQLEIDYVIGESHKELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPSGMGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGENQPFIRNVMTLNSCSPIAGVDVLSFDTERDVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIPEFPLLGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMVLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNGGIMKFAKKQLTCIGCKALLGKADKTLCSHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQQLERWNF 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8057119 8078114 + MELO3C024596.2.1 Cme08g01142 335405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01142 1086 PRINTS DNA-directed DNA-polymerase family B signature 585 598 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cme08g01142 1086 PRINTS DNA-directed DNA-polymerase family B signature 677 689 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cme08g01142 1086 PRINTS DNA-directed DNA-polymerase family B signature 738 746 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cme08g01142 1086 Pfam DNA polymerase family B, exonuclease domain 119 462 IPR006133 -
Cme08g01142 1086 SUPERFAMILY DNA/RNA polymerases 551 961 IPR043502 -
Cme08g01142 1086 SUPERFAMILY Ribonuclease H-like 110 532 IPR012337 -
Cme08g01142 1086 CDD POLBc_delta 567 960 - -
Cme08g01142 1086 ProSitePatterns DNA polymerase family B signature. 740 748 IPR017964 GO:0000166|GO:0003676
Cme08g01142 1086 CDD DNA_polB_delta_exo 290 518 - -
Cme08g01142 1086 Gene3D Palm domain of DNA polymerase 567 797 IPR023211 -
Cme08g01142 1086 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 82 1086 - -
Cme08g01142 1086 SMART polmehr3 293 752 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cme08g01142 1086 TIGRFAM pol2: DNA polymerase (pol2) 352 957 - -
Cme08g01142 1086 Gene3D - 294 512 IPR036397 GO:0003676
Cme08g01142 1086 Gene3D Helix hairpin bin 641 693 - -
Cme08g01142 1086 Gene3D DNA Polymerase, chain B, domain 1 89 266 - -
Cme08g01142 1086 MobiDBLite consensus disorder prediction 1 32 - -
Cme08g01142 1086 Pfam C4-type zinc-finger of DNA polymerase delta 996 1067 IPR025687 -
Cme08g01142 1086 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 82 1086 - -
Cme08g01142 1086 Pfam DNA polymerase family B 526 959 IPR006134 GO:0000166|GO:0003677
Cme08g01142 1086 Gene3D - 814 969 IPR042087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01142 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] - csv:101219332 2097.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01615 Cme-Chr5:25274149 Cme08g01142 Cme-Chr8:8057119 4.68E-94 dispersed
Cme08g01142 Cme-Chr8:8057119 Cme11g00335 Cme-Chr11:3482330 2.65E-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G14700 66.2 6.8e-266 913.7
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G12620 68.1 8.9e-274 939.9
Cme03g02018 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.7 1.7e-141 499.2
Cme10g01189 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 5.7e-155 544.3
Cme11g02167 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.1 4.1e-177 618.2
Cme05g00896 . 1 277 Core DNA Replication Machinery Family AT1G26840 63.2 1.7e-91 332.8
Cme01g01521 . 4 800 Core DNA Replication Machinery Family AT1G79150 58.0 3.0e-245 845.1
Cme04g01735 . 1 939 Core DNA Replication Machinery Family AT1G44900 73.8 0.0e+00 1311.6
Cme08g00150 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 3.0e-268 921.0
Cme01g01361 . 80 830 Core DNA Replication Machinery Family AT2G16440 77.5 0.0e+00 1146.7
Cme05g01856 . 1 742 Core DNA Replication Machinery Family AT2G07690 76.2 0.0e+00 1088.6
Cme08g00004 . 14 785 Core DNA Replication Machinery Family AT5G44635 69.1 0.0e+00 1094.7
Cme01g02199 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1217.6
Cme11g01369 . 12 458 Core DNA Replication Machinery Family AT2G29680 53.3 1.9e-136 483.0
Cme11g01369 . 22 427 Core DNA Replication Machinery Family AT1G07270 52.8 1.7e-120 429.9
Cme01g01799 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 2.5e-257 884.8
Cme04g02557 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Cme01g00219 . 10 477 Core DNA Replication Machinery Family AT2G14050 76.8 2.9e-211 731.9
Cme01g02620 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 4.0e-74 274.6
Cme07g01243 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 2.7e-59 224.9
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT1G19080 54.0 2.5e-46 182.2
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT3G55490 54.0 2.5e-46 182.2
Cme06g00165 . 1 188 Core DNA Replication Machinery Family AT5G49010 55.3 3.3e-46 181.8
Cme11g00335 . 9 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1761.5
Cme12g01926 . 3 622 Core DNA Replication Machinery Family AT1G67630 62.3 5.3e-218 754.2
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g00110 . 1 118 Core DNA Replication Machinery Family AT5G41880 75.4 1.9e-52 203.8
Cme08g01142 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cme04g02239 . 1 495 Core DNA Replication Machinery Family AT2G42120 55.3 4.4e-150 528.1
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g01463 . 34 158 Core DNA Replication Machinery Family AT1G09815 60.8 6.3e-38 153.7
Cme11g01900 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2984.5
Cme09g00647 . 7 1305 Core DNA Replication Machinery Family AT1G08260 60.8 0.0e+00 1701.8
Cme11g01900 . 25 2206 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2938.3
Cme09g00647 . 29 1305 Core DNA Replication Machinery Family AT2G27120 59.2 0.0e+00 1620.1
Cme12g02044 . 7 487 Core DNA Replication Machinery Family AT5G22110 68.9 1.4e-192 669.5
Cme05g00231 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.0 2.1e-308 1055.0
Cme06g02668 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 1.6e-173 605.5
Cme08g01938 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.0e-178 622.9
Cme07g00817 . 1 290 Core DNA Replication Machinery Family AT1G21690 80.4 2.7e-128 455.3
Cme03g00527 . 39 254 Core DNA Replication Machinery Family AT1G77470 78.3 6.1e-89 324.7
Cme06g02413 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-197 686.4
Cme02g01827 . 1 634 Core DNA Replication Machinery Family AT5G08020 66.3 2.8e-240 828.2
Cme06g02413 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.8 7.2e-234 807.4
Cme02g01827 . 1 629 Core DNA Replication Machinery Family AT5G61000 64.3 9.1e-234 806.6
Cme06g02413 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.9 9.9e-230 793.5
Cme04g02390 . 37 142 Core DNA Replication Machinery Family AT4G18590 65.1 1.6e-37 152.1
Cme02g00001 . 1 377 Core DNA Replication Machinery Family AT5G26680 85.0 7.7e-181 630.2
Cme07g01888 . 8 297 Core DNA Replication Machinery Family AT2G25100 68.3 3.7e-115 411.4
Cme11g01841 . 1 849 Core DNA Replication Machinery Family AT1G08130 62.9 1.0e-287 986.1
Cme11g01841 . 201 849 Core DNA Replication Machinery Family AT1G49250 64.2 9.5e-234 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g01142 Cme_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0