Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g01142 | ATGAACAACGGCAGCGCTCGGAAAAGTCGACCGCCCCCTCAGCACCCATCGCCGGCTCCACCGCCAAAGCACCAGGCACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGACAATCTTCTCGACGAGGACGCTCTCATCCTCCGCGACATTGAGGAGCGTCAGGCCCTTGCTTCCCGGATTTCGAAATGGGCACGTCCACCTCTTTCCCAGGATTACCTGTCCCAGTCGAAGAGCATCGTGTTTCAGCAGTTGGAAATTGACTATGTGATCGGGGAAAGTCACAAGGAACTGTTGCCGAATTTGTCTGGCCCAGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGGACATAGTGTATGTTGTCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGTCCTTCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTCGAGGCTAGAATGAAGGAGGTAAATAGAAACAGTAAAGCACCTAGCTTCGTGCGTCGCATTGAGTTGGTCCAAAGGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAATCGTTTCTTAAAATTGTAGTTGCACTCCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCATACAAATTGAGGGCTTTGGTATGAAAAGCTTCATGACGTATGAAAGCAACGTGCTTTTTGCCCTCCGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTTGGAAAGTACAAGAAAACTGTTAGAAGTTCATCATATTGCCAATTGGAGTTTGATTGCTTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGAACCAACCTTTTATTCGGAATGTCATGACCCTTAACTCTTGCTCTCCTATTGCGGGTGTTGATGTCTTATCATTTGATACAGAACGTGATGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGTTGACCCTGATATAATAATTGGATACAACATCTGCAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTGAAAATACCAGAATTTCCATTATTGGGTCGTATCAGGAATAGCAAAGTCCGTGTCAAAGATACAACTTTTTCTTCAAGACAACTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTATGCAACGAGATTATAAATTAAGTTCATACTCGTTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCGGAAACAAGGAGACGTCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTCCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAAGCAAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCCTCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGACGCTCGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTGGAAGAACTATTGACTGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGACCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCGCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCCACTGTTGGTCAGTTGCCTTGTTTAGAAATATCATCAAGTGTGACAAGCTATGGCCGGCAAATGATTGAACACACAAAGAAGCTTGTGGAGGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCCGTTATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCAATGGTCTTGGGAAGGGAAGCAGCTGAGTATATCAGTGGTACTTTCATAAAACCTATCAAGCTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAACCCAAACAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGACAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATCGATAGAGATGTTCCTGGGGCAGTCCAATATGTGAAGAACACAATTTCAGATCTGCTTATGAACCGTGTGGATCTATCACTCTTGGTTATCACTAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACTGCTCCAAATGTTGGCGATCGTGTACCTTATGTGATCATTAAAGCAGCAAAAGGTGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGTATACCGATAGACCCTCAGTATTATCTTGAGAATCAGATCAGCAAGCCGCTTCTACGAATTTTTGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCATCAAACGGTGGTATAATGAAATTTGCTAAAAAACAGCTTACCTGCATTGGCTGCAAGGCTCTTCTAGGCAAGGCAGACAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCTGAACTTTACTGCAAAGCGGTTGCAAATGTGTCTGATCTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGGTCTCTTCACCAAGATGTCCTCTGTACGAGTCGAGACTGTCCTATATTTTATAGAAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCAATTGGAACGTTGGAATTTCTAA | 3261 | 42.84 | MNNGSARKSRPPPQHPSPAPPPKHQALSQEEDFVDEDVFLDDNLLDEDALILRDIEERQALASRISKWARPPLSQDYLSQSKSIVFQQLEIDYVIGESHKELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPSGMGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQRRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIEGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRSSSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGENQPFIRNVMTLNSCSPIAGVDVLSFDTERDVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIPEFPLLGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMVLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNGGIMKFAKKQLTCIGCKALLGKADKTLCSHCKGREAELYCKAVANVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQQLERWNF | 1086 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8057119 | 8078114 | + | MELO3C024596.2.1 | Cme08g01142 | 335405 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g01142 | 1086 | PRINTS | DNA-directed DNA-polymerase family B signature | 585 | 598 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Cme08g01142 | 1086 | PRINTS | DNA-directed DNA-polymerase family B signature | 677 | 689 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Cme08g01142 | 1086 | PRINTS | DNA-directed DNA-polymerase family B signature | 738 | 746 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Cme08g01142 | 1086 | Pfam | DNA polymerase family B, exonuclease domain | 119 | 462 | IPR006133 | - | |
Cme08g01142 | 1086 | SUPERFAMILY | DNA/RNA polymerases | 551 | 961 | IPR043502 | - | |
Cme08g01142 | 1086 | SUPERFAMILY | Ribonuclease H-like | 110 | 532 | IPR012337 | - | |
Cme08g01142 | 1086 | CDD | POLBc_delta | 567 | 960 | - | - | |
Cme08g01142 | 1086 | ProSitePatterns | DNA polymerase family B signature. | 740 | 748 | IPR017964 | GO:0000166|GO:0003676 | |
Cme08g01142 | 1086 | CDD | DNA_polB_delta_exo | 290 | 518 | - | - | |
Cme08g01142 | 1086 | Gene3D | Palm domain of DNA polymerase | 567 | 797 | IPR023211 | - | |
Cme08g01142 | 1086 | PANTHER | DNA POLYMERASE DELTA CATALYTIC SUBUNIT | 82 | 1086 | - | - | |
Cme08g01142 | 1086 | SMART | polmehr3 | 293 | 752 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Cme08g01142 | 1086 | TIGRFAM | pol2: DNA polymerase (pol2) | 352 | 957 | - | - | |
Cme08g01142 | 1086 | Gene3D | - | 294 | 512 | IPR036397 | GO:0003676 | |
Cme08g01142 | 1086 | Gene3D | Helix hairpin bin | 641 | 693 | - | - | |
Cme08g01142 | 1086 | Gene3D | DNA Polymerase, chain B, domain 1 | 89 | 266 | - | - | |
Cme08g01142 | 1086 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cme08g01142 | 1086 | Pfam | C4-type zinc-finger of DNA polymerase delta | 996 | 1067 | IPR025687 | - | |
Cme08g01142 | 1086 | PANTHER | DNA POLYMERASE CATALYTIC SUBUNIT | 82 | 1086 | - | - | |
Cme08g01142 | 1086 | Pfam | DNA polymerase family B | 526 | 959 | IPR006134 | GO:0000166|GO:0003677 | |
Cme08g01142 | 1086 | Gene3D | - | 814 | 969 | IPR042087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01615 | Cme-Chr5:25274149 | Cme08g01142 | Cme-Chr8:8057119 | 4.68E-94 | dispersed | |
Cme08g01142 | Cme-Chr8:8057119 | Cme11g00335 | Cme-Chr11:3482330 | 2.65E-49 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g01142 | K02327 | - | csv:101219332 | 2097.78 |