Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01150 ATGAACAACGGCACGGCCGAAACCGGCGGATTTCTCTCCTCATCCAACATCGGTGGTTTCGGCTACGGAATTGGCGTCTCCTTGGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCACCTCCGTCATTCAGAGTACTGCCAGTCGCTCGCCGCCGCAAGCGGTGGCGGAATTAGATTCCGTCGTTGTCGAAATCGGACTCGATCAGGAAACGATTACGAGTTATCCGAAATTGCTGTATTCTGAAGCGAAGCTTCAGAAGAACGATTCGACTGCTTCTTGTTGTTCAATCTGTTTGGCTGATTATAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTTAGACTTCATCCGACCTGTCCGGTTTGCCGGACGTCGCCGATTCCTACACCGTTGTCGACTCCTCTAGCGGAGCAAGTTCCATTAGCGAGCCGGCGCGATTGA 519 51.45 MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVIQSTASRSPPQAVAELDSVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8111962 8113098 - MELO3C024590.2.1 Cme08g01150 335413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01150 172 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Cme08g01150 172 SMART ring_2 107 148 IPR001841 -
Cme08g01150 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 153 IPR013083 -
Cme08g01150 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 170 IPR045899 -
Cme08g01150 172 SUPERFAMILY RING/U-box 83 154 - -
Cme08g01150 172 CDD RING-H2_PA-TM-RING 106 149 - -
Cme08g01150 172 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 170 - -
Cme08g01150 172 Pfam Ring finger domain 107 149 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01481 Cme-Chr3:24026283 Cme08g01150 Cme-Chr8:8111962 2.94E-37 dispersed
Cme07g01560 Cme-Chr7:21454876 Cme08g01150 Cme-Chr8:8111962 2.10E-21 dispersed
Cme08g01150 Cme-Chr8:8111962 Cme03g01838 Cme-Chr3:26724285 3.64E-21 dispersed
Cme07g01471 Cme-Chr7:20488360 Cme08g01150 Cme-Chr8:8111962 2.85E-12 transposed
Cme03g00057 Cme-Chr3:825441 Cme08g01150 Cme-Chr8:8111962 6.85E-11 transposed
Cme06g00146 Cme-Chr6:887966 Cme08g01150 Cme-Chr8:8111962 1.90E-32 transposed
Cme04g02311 Cme-Chr4:30059626 Cme08g01150 Cme-Chr8:8111962 2.76E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01150 - - csv:101218618 301.212