Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g01151 | ATATTTTTTTTAAAAAAATTAAAGATAATTCGTTTGAAAAGTCGAACCTTCATCACTTTCTTCAATTTCCACGTTCATGGATGCAACCATTACAGCTCCTCCATTGACTACACACCATCATTAAATCCCCAATTTCCATTCCATTTCGCTCTTCATTTCATTCAAAATCAGAGTAAAAACTTAGAACTGATCACAATAATGAACGATCTGTTTTCCACCGATTCCTTCCGCCAAGAGCGTCACCATCACCGCCATGACACCGTCGAGATGTCCAACAACTCCCCGTCCTCAACGACGATCAATCTAAACACCTTCTTCGACGACGTGGAGTCGGTCAAGGCGGAGTTAACAGAACTCGAAGGGCTCCACCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTACACAATTCGAAGGCGATTAAGGATGTTCGATCGCGAATGGAAACGGCTGTGACATTGGCTTTGAAGAAGGCTAGGTTTATCAAGGTCCGGTTGGAGGAACTGGACCGGTCGAATGAGGAGAACCGGAAGCTTCCTGGTTGTGGGTATGGATCCTCGGCTGACCGGTCGAGAACATCGGTGGTGAGCGGATTGAGGAAGAAGCTGTGTGATTCAATGGAGAGTTTTAACAGATTGAGAGAAGAGATAACGAAAACGTATAAGGATACGATTGAACGGAGATATTTTACAATTACAGGGGAAAATCCGGATGAGAAGACTGTTGATTTGTTGATCTCTACAGGTGAAAGTGAAACGTTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTTTGGAAACGATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAAGACATAGAGAGGAACTTGAGAGAGTTGCACCAAGTTTTCTTGGACATGGCGGTTTTGGTTCAAGCACAGGGGCAGCAGTTAGACGACATCGAAAGCCAAGTTACTCGAGCCAACTCTGCCGTCAAGCGGGGCACGTCTGAGCTACAAACTGCAAGATACTATCAAAAAAACACTCGCAAATGGATCTGCATAGGCGTTGGTGTTCTTGGGGTCATTCTCTTCATCATTATCCTTTCTGTCGTCCTCTCGAAGAGGAATAATTAA | 1113 | 44.38 | IFFLKKLKIIRLKSRTFITFFNFHVHGCNHYSSSIDYTPSLNPQFPFHFALHFIQNQSKNLELITIMNDLFSTDSFRQERHHHRHDTVEMSNNSPSSTTINLNTFFDDVESVKAELTELEGLHRSLQNSHEQSKTLHNSKAIKDVRSRMETAVTLALKKARFIKVRLEELDRSNEENRKLPGCGYGSSADRSRTSVVSGLRKKLCDSMESFNRLREEITKTYKDTIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFLDMAVLVQAQGQQLDDIESQVTRANSAVKRGTSELQTARYYQKNTRKWICIGVGVLGVILFIIILSVVLSKRNN | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8134579 | 8135949 | - | MELO3C024589.2.1 | Cme08g01151 | 335414 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g01151 | 370 | CDD | SNARE_syntaxin1-like | 271 | 333 | - | - | |
Cme08g01151 | 370 | SUPERFAMILY | t-snare proteins | 101 | 327 | IPR010989 | GO:0016020|GO:0016192 | |
Cme08g01151 | 370 | ProSitePatterns | Syntaxin / epimorphin family signature. | 278 | 317 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cme08g01151 | 370 | Pfam | Syntaxin | 105 | 307 | IPR006011 | GO:0016020 | |
Cme08g01151 | 370 | Gene3D | - | 102 | 229 | - | - | |
Cme08g01151 | 370 | SMART | tSNARE_6 | 267 | 334 | IPR000727 | - | |
Cme08g01151 | 370 | PANTHER | SYNTAXIN-121 | 78 | 362 | - | - | |
Cme08g01151 | 370 | Pfam | SNARE domain | 309 | 360 | IPR000727 | - | |
Cme08g01151 | 370 | SMART | SynN_4 | 97 | 223 | IPR006011 | GO:0016020 | |
Cme08g01151 | 370 | PANTHER | SYNTAXIN | 78 | 362 | IPR045242 | - | |
Cme08g01151 | 370 | Gene3D | - | 267 | 366 | - | - | |
Cme08g01151 | 370 | CDD | SynN | 105 | 259 | IPR006011 | GO:0016020 | |
Cme08g01151 | 370 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 272 | 334 | IPR000727 | - | |
Cme08g01151 | 370 | Coils | Coil | 109 | 129 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g01151 | Cme-Chr8:8134579 | Cme12g01397 | Cme-Chr12:21851130 | 2.12E-115 | dispersed | |
Cme04g01796 | Cme-Chr4:25668463 | Cme08g01151 | Cme-Chr8:8134579 | 1.86E-95 | transposed | |
Cme05g01576 | Cme-Chr5:24990079 | Cme08g01151 | Cme-Chr8:8134579 | 5.22E-06 | transposed | |
Cme06g02454 | Cme-Chr6:31570340 | Cme08g01151 | Cme-Chr8:8134579 | 7.73E-14 | transposed | |
Cme11g00777 | Cme-Chr11:9709170 | Cme08g01151 | Cme-Chr8:8134579 | 1.05E-64 | transposed | |
Cme04g02317 | Cme-Chr4:30097548 | Cme08g01151 | Cme-Chr8:8134579 | 1.99E-141 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g01151 | K08486 | - | csv:101213443 | 539.65 |