Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01151 ATATTTTTTTTAAAAAAATTAAAGATAATTCGTTTGAAAAGTCGAACCTTCATCACTTTCTTCAATTTCCACGTTCATGGATGCAACCATTACAGCTCCTCCATTGACTACACACCATCATTAAATCCCCAATTTCCATTCCATTTCGCTCTTCATTTCATTCAAAATCAGAGTAAAAACTTAGAACTGATCACAATAATGAACGATCTGTTTTCCACCGATTCCTTCCGCCAAGAGCGTCACCATCACCGCCATGACACCGTCGAGATGTCCAACAACTCCCCGTCCTCAACGACGATCAATCTAAACACCTTCTTCGACGACGTGGAGTCGGTCAAGGCGGAGTTAACAGAACTCGAAGGGCTCCACCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTACACAATTCGAAGGCGATTAAGGATGTTCGATCGCGAATGGAAACGGCTGTGACATTGGCTTTGAAGAAGGCTAGGTTTATCAAGGTCCGGTTGGAGGAACTGGACCGGTCGAATGAGGAGAACCGGAAGCTTCCTGGTTGTGGGTATGGATCCTCGGCTGACCGGTCGAGAACATCGGTGGTGAGCGGATTGAGGAAGAAGCTGTGTGATTCAATGGAGAGTTTTAACAGATTGAGAGAAGAGATAACGAAAACGTATAAGGATACGATTGAACGGAGATATTTTACAATTACAGGGGAAAATCCGGATGAGAAGACTGTTGATTTGTTGATCTCTACAGGTGAAAGTGAAACGTTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTTTGGAAACGATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAAGACATAGAGAGGAACTTGAGAGAGTTGCACCAAGTTTTCTTGGACATGGCGGTTTTGGTTCAAGCACAGGGGCAGCAGTTAGACGACATCGAAAGCCAAGTTACTCGAGCCAACTCTGCCGTCAAGCGGGGCACGTCTGAGCTACAAACTGCAAGATACTATCAAAAAAACACTCGCAAATGGATCTGCATAGGCGTTGGTGTTCTTGGGGTCATTCTCTTCATCATTATCCTTTCTGTCGTCCTCTCGAAGAGGAATAATTAA 1113 44.38 IFFLKKLKIIRLKSRTFITFFNFHVHGCNHYSSSIDYTPSLNPQFPFHFALHFIQNQSKNLELITIMNDLFSTDSFRQERHHHRHDTVEMSNNSPSSTTINLNTFFDDVESVKAELTELEGLHRSLQNSHEQSKTLHNSKAIKDVRSRMETAVTLALKKARFIKVRLEELDRSNEENRKLPGCGYGSSADRSRTSVVSGLRKKLCDSMESFNRLREEITKTYKDTIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFLDMAVLVQAQGQQLDDIESQVTRANSAVKRGTSELQTARYYQKNTRKWICIGVGVLGVILFIIILSVVLSKRNN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8134579 8135949 - MELO3C024589.2.1 Cme08g01151 335414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01151 370 CDD SNARE_syntaxin1-like 271 333 - -
Cme08g01151 370 SUPERFAMILY t-snare proteins 101 327 IPR010989 GO:0016020|GO:0016192
Cme08g01151 370 ProSitePatterns Syntaxin / epimorphin family signature. 278 317 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme08g01151 370 Pfam Syntaxin 105 307 IPR006011 GO:0016020
Cme08g01151 370 Gene3D - 102 229 - -
Cme08g01151 370 SMART tSNARE_6 267 334 IPR000727 -
Cme08g01151 370 PANTHER SYNTAXIN-121 78 362 - -
Cme08g01151 370 Pfam SNARE domain 309 360 IPR000727 -
Cme08g01151 370 SMART SynN_4 97 223 IPR006011 GO:0016020
Cme08g01151 370 PANTHER SYNTAXIN 78 362 IPR045242 -
Cme08g01151 370 Gene3D - 267 366 - -
Cme08g01151 370 CDD SynN 105 259 IPR006011 GO:0016020
Cme08g01151 370 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 272 334 IPR000727 -
Cme08g01151 370 Coils Coil 109 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01151 K08486 STX1B_2_3; syntaxin 1B/2/3 - csv:101213443 539.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01151 Cme-Chr8:8134579 Cme12g01397 Cme-Chr12:21851130 2.12E-115 dispersed
Cme04g01796 Cme-Chr4:25668463 Cme08g01151 Cme-Chr8:8134579 1.86E-95 transposed
Cme05g01576 Cme-Chr5:24990079 Cme08g01151 Cme-Chr8:8134579 5.22E-06 transposed
Cme06g02454 Cme-Chr6:31570340 Cme08g01151 Cme-Chr8:8134579 7.73E-14 transposed
Cme11g00777 Cme-Chr11:9709170 Cme08g01151 Cme-Chr8:8134579 1.05E-64 transposed
Cme04g02317 Cme-Chr4:30097548 Cme08g01151 Cme-Chr8:8134579 1.99E-141 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01671 . 8 338 SNARE and Associated Proteins AT3G24350 64.5 2.8e-102 369.0
Cme08g02007 CCT 1 309 SNARE and Associated Proteins AT1G08560 68.8 6.5e-100 360.9
Cme04g02317 . 22 280 SNARE and Associated Proteins AT3G11820 80.3 6.1e-114 407.5
Cme08g01151 . 90 349 SNARE and Associated Proteins AT3G11820 70.0 6.6e-100 360.9
Cme12g01397 . 31 281 SNARE and Associated Proteins AT3G11820 65.3 1.1e-91 333.6
Cme04g01796 CCT 30 282 SNARE and Associated Proteins AT3G11820 52.2 9.6e-67 250.8
Cme04g02317 . 31 280 SNARE and Associated Proteins AT3G52400 68.8 2.3e-90 329.3
Cme08g01151 . 67 349 SNARE and Associated Proteins AT3G52400 59.8 1.9e-84 309.7
Cme12g01397 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 5.7e-81 298.1
Cme12g01397 . 1 299 SNARE and Associated Proteins AT4G03330 67.5 5.4e-107 384.4
Cme04g02317 . 1 285 SNARE and Associated Proteins AT4G03330 56.6 5.4e-83 304.7
Cme08g01151 . 67 347 SNARE and Associated Proteins AT4G03330 54.8 1.1e-78 290.4
Cme04g01796 CCT 1 282 SNARE and Associated Proteins AT4G03330 51.4 1.7e-68 256.5
Cme12g01397 . 1 299 SNARE and Associated Proteins AT1G61290 79.3 1.6e-127 452.6
Cme04g02317 . 1 285 SNARE and Associated Proteins AT1G61290 61.3 9.2e-91 330.5
Cme08g01151 . 67 365 SNARE and Associated Proteins AT1G61290 54.5 1.5e-80 296.6
Cme12g01397 . 1 299 SNARE and Associated Proteins AT1G11250 77.9 2.8e-124 441.8
Cme04g02317 . 1 285 SNARE and Associated Proteins AT1G11250 61.8 2.8e-92 335.5
Cme08g01151 . 67 361 SNARE and Associated Proteins AT1G11250 54.6 3.1e-83 305.4
Cme04g01796 CCT 1 305 SNARE and Associated Proteins AT3G03800 73.3 4.6e-114 407.9
Cme11g00777 . 48 325 SNARE and Associated Proteins AT3G03800 52.9 1.3e-73 273.5
Cme04g01796 CCT 1 200 SNARE and Associated Proteins AT5G08080 79.0 5.7e-82 300.8
Cme11g00777 . 30 224 SNARE and Associated Proteins AT5G08080 53.3 1.4e-43 173.3
Cme06g02454 . 1 256 SNARE and Associated Proteins AT5G16830 58.8 8.5e-75 277.3
Cme06g02454 . 1 256 SNARE and Associated Proteins AT5G46860 65.6 1.4e-79 293.1
Cme06g02454 . 1 256 SNARE and Associated Proteins AT4G17730 60.9 6.8e-74 274.2
Cme06g02454 . 65 256 SNARE and Associated Proteins AT1G32270 59.9 4.3e-52 202.2
Cme10g01057 . 1 336 SNARE and Associated Proteins AT5G05760 64.7 3.4e-110 395.2
Cme03g01671 . 8 338 SNARE and Associated Proteins AT3G24350 64.5 2.8e-102 369.0
Cme05g01576 . 1 327 SNARE and Associated Proteins AT5G26980 75.8 5.5e-126 447.6
Cme01g02227 . 1 302 SNARE and Associated Proteins AT5G26980 66.0 3.1e-97 352.1
Cme05g01576 . 1 329 SNARE and Associated Proteins AT4G02195 63.7 3.5e-104 375.2
Cme01g02227 . 1 302 SNARE and Associated Proteins AT4G02195 67.3 1.8e-100 362.8
Cme05g01576 . 1 328 SNARE and Associated Proteins AT3G05710 74.8 7.9e-128 453.8
Cme01g02227 . 1 302 SNARE and Associated Proteins AT3G05710 63.1 6.3e-93 337.8
Cme01g00994 . 1 233 SNARE and Associated Proteins AT1G16240 73.8 2.4e-91 332.0
Cme06g02818 . 4 220 SNARE and Associated Proteins AT1G16240 65.3 1.9e-72 269.2
Cme01g00994 . 1 233 SNARE and Associated Proteins AT1G79590 73.0 1.2e-89 326.6
Cme06g02818 . 4 220 SNARE and Associated Proteins AT1G79590 65.3 4.4e-73 271.6
Cme11g02501 . 56 246 SNARE and Associated Proteins AT1G28490 71.7 1.4e-66 249.6
Cme04g02538 . 1 264 SNARE and Associated Proteins AT3G09740 78.6 4.9e-112 401.0
Cme04g02539 . 1 264 SNARE and Associated Proteins AT3G09740 78.6 4.9e-112 401.0
Cme11g01790 . 1 235 SNARE and Associated Proteins AT3G09740 66.2 5.4e-79 291.2
Cme04g02538 . 1 264 SNARE and Associated Proteins AT3G45280 64.8 1.1e-87 320.1
Cme04g02539 . 1 264 SNARE and Associated Proteins AT3G45280 64.8 1.1e-87 320.1
Cme11g01790 . 1 237 SNARE and Associated Proteins AT3G45280 64.0 2.8e-75 278.9
Cme04g02538 . 1 261 SNARE and Associated Proteins AT3G61450 68.2 6.9e-95 344.0
Cme04g02539 . 1 261 SNARE and Associated Proteins AT3G61450 68.2 6.9e-95 344.0
Cme11g01790 . 1 235 SNARE and Associated Proteins AT3G61450 60.6 1.4e-74 276.6
Cme03g00216 . 65 308 SNARE and Associated Proteins AT1G51740 74.0 1.2e-93 339.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002313 5 3 2 3 3 1 2 1 1 2 1 2 2 2 2 2 2 2 3 1 3 2 2 2 3 1 2 3 2 0 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g01151 Cme_Chr08 FPKM 0.0 0.0 10.92241 0.0 0.0 0.0 0.0 0.0 2.941658 0.0