Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01151 ATATTTTTTTTAAAAAAATTAAAGATAATTCGTTTGAAAAGTCGAACCTTCATCACTTTCTTCAATTTCCACGTTCATGGATGCAACCATTACAGCTCCTCCATTGACTACACACCATCATTAAATCCCCAATTTCCATTCCATTTCGCTCTTCATTTCATTCAAAATCAGAGTAAAAACTTAGAACTGATCACAATAATGAACGATCTGTTTTCCACCGATTCCTTCCGCCAAGAGCGTCACCATCACCGCCATGACACCGTCGAGATGTCCAACAACTCCCCGTCCTCAACGACGATCAATCTAAACACCTTCTTCGACGACGTGGAGTCGGTCAAGGCGGAGTTAACAGAACTCGAAGGGCTCCACCGAAGCCTCCAGAATTCTCACGAACAGAGCAAAACTCTACACAATTCGAAGGCGATTAAGGATGTTCGATCGCGAATGGAAACGGCTGTGACATTGGCTTTGAAGAAGGCTAGGTTTATCAAGGTCCGGTTGGAGGAACTGGACCGGTCGAATGAGGAGAACCGGAAGCTTCCTGGTTGTGGGTATGGATCCTCGGCTGACCGGTCGAGAACATCGGTGGTGAGCGGATTGAGGAAGAAGCTGTGTGATTCAATGGAGAGTTTTAACAGATTGAGAGAAGAGATAACGAAAACGTATAAGGATACGATTGAACGGAGATATTTTACAATTACAGGGGAAAATCCGGATGAGAAGACTGTTGATTTGTTGATCTCTACAGGTGAAAGTGAAACGTTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTTTGGAAACGATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAAGACATAGAGAGGAACTTGAGAGAGTTGCACCAAGTTTTCTTGGACATGGCGGTTTTGGTTCAAGCACAGGGGCAGCAGTTAGACGACATCGAAAGCCAAGTTACTCGAGCCAACTCTGCCGTCAAGCGGGGCACGTCTGAGCTACAAACTGCAAGATACTATCAAAAAAACACTCGCAAATGGATCTGCATAGGCGTTGGTGTTCTTGGGGTCATTCTCTTCATCATTATCCTTTCTGTCGTCCTCTCGAAGAGGAATAATTAA 1113 44.38 IFFLKKLKIIRLKSRTFITFFNFHVHGCNHYSSSIDYTPSLNPQFPFHFALHFIQNQSKNLELITIMNDLFSTDSFRQERHHHRHDTVEMSNNSPSSTTINLNTFFDDVESVKAELTELEGLHRSLQNSHEQSKTLHNSKAIKDVRSRMETAVTLALKKARFIKVRLEELDRSNEENRKLPGCGYGSSADRSRTSVVSGLRKKLCDSMESFNRLREEITKTYKDTIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFLDMAVLVQAQGQQLDDIESQVTRANSAVKRGTSELQTARYYQKNTRKWICIGVGVLGVILFIIILSVVLSKRNN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8134579 8135949 - MELO3C024589.2.1 Cme08g01151 335414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01151 370 CDD SNARE_syntaxin1-like 271 333 - -
Cme08g01151 370 SUPERFAMILY t-snare proteins 101 327 IPR010989 GO:0016020|GO:0016192
Cme08g01151 370 ProSitePatterns Syntaxin / epimorphin family signature. 278 317 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme08g01151 370 Pfam Syntaxin 105 307 IPR006011 GO:0016020
Cme08g01151 370 Gene3D - 102 229 - -
Cme08g01151 370 SMART tSNARE_6 267 334 IPR000727 -
Cme08g01151 370 PANTHER SYNTAXIN-121 78 362 - -
Cme08g01151 370 Pfam SNARE domain 309 360 IPR000727 -
Cme08g01151 370 SMART SynN_4 97 223 IPR006011 GO:0016020
Cme08g01151 370 PANTHER SYNTAXIN 78 362 IPR045242 -
Cme08g01151 370 Gene3D - 267 366 - -
Cme08g01151 370 CDD SynN 105 259 IPR006011 GO:0016020
Cme08g01151 370 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 272 334 IPR000727 -
Cme08g01151 370 Coils Coil 109 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01151 Cme-Chr8:8134579 Cme12g01397 Cme-Chr12:21851130 2.12E-115 dispersed
Cme04g01796 Cme-Chr4:25668463 Cme08g01151 Cme-Chr8:8134579 1.86E-95 transposed
Cme05g01576 Cme-Chr5:24990079 Cme08g01151 Cme-Chr8:8134579 5.22E-06 transposed
Cme06g02454 Cme-Chr6:31570340 Cme08g01151 Cme-Chr8:8134579 7.73E-14 transposed
Cme11g00777 Cme-Chr11:9709170 Cme08g01151 Cme-Chr8:8134579 1.05E-64 transposed
Cme04g02317 Cme-Chr4:30097548 Cme08g01151 Cme-Chr8:8134579 1.99E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01151 K08486 - csv:101213443 539.65