Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01155 TCATTTCTTCGCCTTTGCATTTCGACGGGAGACCTGAAAAAGGCGGAAAAAGGCAATAGAAGCATCCCGTGGCTGAATAAATTCTGTTTATCAATCGGCTTCTTCTTGATCAAGCTCTTCTCTCCCCGACCACCATACCACATTGGGTCGGAAAAAAACATTCCATCTCCAATGGGAGTTCCACAGGCCATGGAAATTCTCACCCAGAGAGCCGCACTTGTTCGAGAGTCGCTTCAAAAGAGCCAGAATGTCACCGAGAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAACCGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAAAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTGGCTCAGTTTGATCTTACACGCAAGGCCGAGGCTAAAATACTCAGGGGACCACATGAGGACTTAGAGATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTACTGGGAACAAAAATTTCAAATGTAACGAAGCTATTCTTATCCACACAAGCAACTTGCTTGTTAAAGCAATTTCAAAGCTAGAAGATGAATTCAGACAGCTTTTAACAAATTACAGTAAGCCCGTGGAACCTGATCGTCTATTTGATTGCCTCCCCAACAATTTGCGTCCATCATCAGCATCTTCACACCATGGTGACAGTGGTAGCAAAAATAACTCTGACAATCACAACAAAAGCTTAGAAGCTGCCGTCTTCATTCCACCAACTCTAATTCCGCCCAGGGTTCTTCCATTGTTGCATGACTTGGCTCAACAAATGATTCAGGCTGGTCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTTGAGAGGCTTACCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATCTGTGATCAAATTTTTGACGGTGCAGACTCTCTCCAAGATCAATGCTTCGCTGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCCATTGCCAGAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAGTCTGAGATTGAAACACTTTTTGGAAGTAAAGCATGTATTGAAATGCGGGATTCTGCATTGAGCTTAACCACACGCCTTGCCGAGACAGCTCAAGAGACCTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACGGCAGTTCTGGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTCTGTTTGACTACCAATCTACTTTGAAGCAGCTATTCCAAGATTTTGACGCTAGTGATCCAGATGCTCAGATAGCAGTGGTAACTACAAGAATCATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAACAATATAGGGATCCTGCACTGACTCAATTATTTCTTATGAACAATATTCACTATATTGTGAGATCCGTCCGAAGATCGGAGGCAAAGGATTTGCTGGGTGATGACTGGGTGCAGATACATCGAAGGGTTGTGCAGCAGCATGCAAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAGGCCTCAGGTAGTGGTGGTGGTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTCAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTAAGGTTGGCAGTAGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGCAGGCCTATGATTGAGAATGGGAAAAATCCTCAAAAATACATCAGATATTCACCGGAGGATCTCGAGCGTATGCTGAATGAATTTTTTGAGGGCAAGACATTCAGTGAGCAAAAGCGCTAG 2091 43.76 SFLRLCISTGDLKKAEKGNRSIPWLNKFCLSIGFFLIKLFSPRPPYHIGSEKNIPSPMGVPQAMEILTQRAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKNFKCNEAILIHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNNLRPSSASSHHGDSGSKNNSDNHNKSLEAAVFIPPTLIPPRVLPLLHDLAQQMIQAGHQQQLFRIYRDTRASVLEQSLRKLGVERLTKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIARSKRSPEKLFVLLDMYEIMRELQSEIETLFGSKACIEMRDSALSLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQIAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRVVQQHANQYKRISWAKILQCLTVQASGSGGGSGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGRPMIENGKNPQKYIRYSPEDLERMLNEFFEGKTFSEQKR 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8162163 8170295 + MELO3C024585.2.1 Cme08g01155 335418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01155 696 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 93 693 - -
Cme08g01155 696 Pfam Exo70 exocyst complex subunit 330 684 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme08g01155 696 MobiDBLite consensus disorder prediction 225 248 - -
Cme08g01155 696 SUPERFAMILY Cullin repeat-like 133 687 IPR016159 -
Cme08g01155 696 Gene3D Exocyst complex component Exo70 132 696 - -
Cme08g01155 696 MobiDBLite consensus disorder prediction 226 248 - -
Cme08g01155 696 PANTHER EXOCYST COMPLEX PROTEIN EXO70 93 693 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01155 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:105436019 1208.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02110 Cme-Chr3:28354220 Cme08g01155 Cme-Chr8:8162163 2.41E-46 dispersed
Cme08g01155 Cme-Chr8:8162163 Cme10g00165 Cme-Chr10:1139854 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g903 Blo01g01242 . . . . . . . . . . Cma07g00826 Car03g01010 Car07g00813 Sed14g0274 Cpe10g00315 . Bhi03g01779 Tan03g1260 Cmetu08g1948 . Hepe04g1072 . . . . . . . . . . . Cone13ag1144 Cone19ag1123 Lsi01g01185 Csa06g02721 Chy08g00976 . . . . . . . Bma01g02005 . . Cmo03g01110 Cmo07g00855 . . . . . Cpe19g00500 . . . . . . . . . . . . . . . . . Cme08g01155
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00165 . 14 651 EXO70 exocyst subunit family AT5G03540 77.1 5.7e-287 983.4
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G03540 70.6 1.5e-263 905.6
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G52340 79.7 1.3e-296 1015.4
Cme10g00165 . 16 651 EXO70 exocyst subunit family AT5G52340 74.2 9.3e-271 929.5
Cme08g01155 . 202 689 EXO70 exocyst subunit family AT5G52350 63.2 5.8e-174 607.8
Cme10g00165 . 151 651 EXO70 exocyst subunit family AT5G52350 60.6 1.2e-168 590.1
Cme12g00048 . 46 668 EXO70 exocyst subunit family AT5G58430 67.4 1.2e-246 849.4
Cme12g00048 . 46 667 EXO70 exocyst subunit family AT1G07000 53.0 2.2e-176 615.9
Cme07g01926 . 62 675 EXO70 exocyst subunit family AT5G13150 53.9 1.0e-171 600.5
Cme09g01028 . 99 710 EXO70 exocyst subunit family AT5G13990 54.2 5.2e-190 661.4
Cme04g01362 . 9 609 EXO70 exocyst subunit family AT1G72470 64.4 4.3e-215 744.6
Cme04g01362 . 9 607 EXO70 exocyst subunit family AT1G54090 62.2 2.2e-208 722.2
Cme04g01362 . 9 608 EXO70 exocyst subunit family AT3G14090 64.7 9.6e-220 760.0
Cme02g00990 . 13 651 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-229 791.6
Cme12g01592 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 8.3e-225 776.9
Cme03g01702 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 4.2e-293 1003.8
Cme11g01259 . 33 598 EXO70 exocyst subunit family AT3G55150 50.3 3.1e-149 525.8
Cme04g02590 . 27 632 EXO70 exocyst subunit family AT3G09520 54.4 1.4e-178 623.2
Cme11g01259 . 16 598 EXO70 exocyst subunit family AT5G59730 50.8 1.4e-154 543.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g01155 Cme_Chr08 FPKM 9.492887 11.948108 13.112036 12.181637 11.698266 11.554631 11.259185 13.212784 11.986907 13.60756