Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g01161 | ATGCGTGGTGCCTCTCGAGCTCCGAACCCGTCGGAGCCACTGCCTCACTCTCACTCCCATACTGCCGCCCAGATCCTACCACCTCTCAACCGCCAGCTCGCTGGTCAATATTACCATTTCGGCGCCGCTTCTTCCAATGCTATTGATAATCAACCTGATACCGTCGTTGTTAAACCTCTGAAATCAAAGCAGAAGGGCGTCATGTATAACAATGTGGTTAAATCGAATGACTACATTCATGATGAGGGGTCTTCAAAAGATGCTCTTAGTTGTGTTCAAACACCTGTGTCTGCAAAAGGAGGAAGGGCGTACAACAAGTCAAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCTGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAGGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTTAATCAACAAATTCCAGGAAATGTGGATAGTGACGCTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATTTGAGTGAAGATGAAAATATCCAAAAGTGGCTGTTCGTAACAGAAGACGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTGCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAATGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATTGAACCTCTAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGAGGAATGATGAAGATTCTTCCTTCAGATATTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTCAGCATTACAGATATGTGGAGAACAGATTATATTGCATGGGATCAATCAGATATGGTTACTCATGACTTCTTAATATCTGATGTCAATACTCAAAGGTCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATGTTAACTTAAGACAGAGGTGA | 1392 | 41.45 | MRGASRAPNPSEPLPHSHSHTAAQILPPLNRQLAGQYYHFGAASSNAIDNQPDTVVVKPLKSKQKGVMYNNVVKSNDYIHDEGSSKDALSCVQTPVSAKGGRAYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDASMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDENIQKWLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPLAHLSQHSSSCDVNGSNEFPGGMMKILPSDIDNDADYWLLSDAEVSITDMWRTDYIAWDQSDMVTHDFLISDVNTQRSRLGSPHSETAEAPSDVNLRQR | 463 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8203952 | 8210580 | + | MELO3C024578.2.1 | Cme08g01161 | 335424 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g01161 | 463 | Pfam | E2F/DP family winged-helix DNA-binding domain | 139 | 202 | IPR003316 | GO:0005667|GO:0006355 | |
Cme08g01161 | 463 | PANTHER | TRANSCRIPTION FACTOR E2FB | 23 | 451 | - | - | |
Cme08g01161 | 463 | MobiDBLite | consensus disorder prediction | 103 | 128 | - | - | |
Cme08g01161 | 463 | PANTHER | TRANSCRIPTION FACTOR E2F | 23 | 451 | IPR015633 | GO:0000978|GO:0006357 | |
Cme08g01161 | 463 | SUPERFAMILY | Winged helix DNA-binding domain | 137 | 200 | IPR036390 | - | |
Cme08g01161 | 463 | Gene3D | - | 209 | 319 | - | - | |
Cme08g01161 | 463 | Coils | Coil | 222 | 249 | - | - | |
Cme08g01161 | 463 | Pfam | E2F transcription factor CC-MB domain | 218 | 318 | IPR032198 | GO:0046983 | |
Cme08g01161 | 463 | SUPERFAMILY | E2F-DP heterodimerization region | 216 | 319 | IPR037241 | - | |
Cme08g01161 | 463 | Gene3D | - | 131 | 205 | IPR036388 | - | |
Cme08g01161 | 463 | MobiDBLite | consensus disorder prediction | 99 | 128 | - | - | |
Cme08g01161 | 463 | SMART | E2F_TDP_2 | 137 | 202 | IPR003316 | GO:0005667|GO:0006355 | |
Cme08g01161 | 463 | MobiDBLite | consensus disorder prediction | 441 | 463 | - | - | |
Cme08g01161 | 463 | CDD | E2F_DD | 218 | 319 | IPR032198 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g00246 | Cme-Chr5:1809326 | Cme08g01161 | Cme-Chr8:8203952 | 5.48E-162 | dispersed | |
Cme08g01161 | Cme-Chr8:8203952 | Cme12g01722 | Cme-Chr12:24006819 | 1.15E-06 | dispersed | |
Cme08g01161 | Cme-Chr8:8203952 | Cme08g01162 | Cme-Chr8:8209889 | 1.88E-14 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41846 | PF16421 | E2F_CC-MB | 5.00E-33 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g01161 | K06620 | - | csv:101212480 | 781.941 |