Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01161 ATGCGTGGTGCCTCTCGAGCTCCGAACCCGTCGGAGCCACTGCCTCACTCTCACTCCCATACTGCCGCCCAGATCCTACCACCTCTCAACCGCCAGCTCGCTGGTCAATATTACCATTTCGGCGCCGCTTCTTCCAATGCTATTGATAATCAACCTGATACCGTCGTTGTTAAACCTCTGAAATCAAAGCAGAAGGGCGTCATGTATAACAATGTGGTTAAATCGAATGACTACATTCATGATGAGGGGTCTTCAAAAGATGCTCTTAGTTGTGTTCAAACACCTGTGTCTGCAAAAGGAGGAAGGGCGTACAACAAGTCAAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCTGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAGGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTTAATCAACAAATTCCAGGAAATGTGGATAGTGACGCTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATTTGAGTGAAGATGAAAATATCCAAAAGTGGCTGTTCGTAACAGAAGACGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTGCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAATGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATTGAACCTCTAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGAGGAATGATGAAGATTCTTCCTTCAGATATTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTCAGCATTACAGATATGTGGAGAACAGATTATATTGCATGGGATCAATCAGATATGGTTACTCATGACTTCTTAATATCTGATGTCAATACTCAAAGGTCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATGTTAACTTAAGACAGAGGTGA 1392 41.45 MRGASRAPNPSEPLPHSHSHTAAQILPPLNRQLAGQYYHFGAASSNAIDNQPDTVVVKPLKSKQKGVMYNNVVKSNDYIHDEGSSKDALSCVQTPVSAKGGRAYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDASMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDENIQKWLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPLAHLSQHSSSCDVNGSNEFPGGMMKILPSDIDNDADYWLLSDAEVSITDMWRTDYIAWDQSDMVTHDFLISDVNTQRSRLGSPHSETAEAPSDVNLRQR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8203952 8210580 + MELO3C024578.2.1 Cme08g01161 335424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01161 463 Pfam E2F/DP family winged-helix DNA-binding domain 139 202 IPR003316 GO:0005667|GO:0006355
Cme08g01161 463 PANTHER TRANSCRIPTION FACTOR E2FB 23 451 - -
Cme08g01161 463 MobiDBLite consensus disorder prediction 103 128 - -
Cme08g01161 463 PANTHER TRANSCRIPTION FACTOR E2F 23 451 IPR015633 GO:0000978|GO:0006357
Cme08g01161 463 SUPERFAMILY Winged helix DNA-binding domain 137 200 IPR036390 -
Cme08g01161 463 Gene3D - 209 319 - -
Cme08g01161 463 Coils Coil 222 249 - -
Cme08g01161 463 Pfam E2F transcription factor CC-MB domain 218 318 IPR032198 GO:0046983
Cme08g01161 463 SUPERFAMILY E2F-DP heterodimerization region 216 319 IPR037241 -
Cme08g01161 463 Gene3D - 131 205 IPR036388 -
Cme08g01161 463 MobiDBLite consensus disorder prediction 99 128 - -
Cme08g01161 463 SMART E2F_TDP_2 137 202 IPR003316 GO:0005667|GO:0006355
Cme08g01161 463 MobiDBLite consensus disorder prediction 441 463 - -
Cme08g01161 463 CDD E2F_DD 218 319 IPR032198 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00246 Cme-Chr5:1809326 Cme08g01161 Cme-Chr8:8203952 5.48E-162 dispersed
Cme08g01161 Cme-Chr8:8203952 Cme12g01722 Cme-Chr12:24006819 1.15E-06 dispersed
Cme08g01161 Cme-Chr8:8203952 Cme08g01162 Cme-Chr8:8209889 1.88E-14 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41846 PF16421 E2F_CC-MB 5.00E-33 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01161 K06620 - csv:101212480 781.941