Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01161 ATGCGTGGTGCCTCTCGAGCTCCGAACCCGTCGGAGCCACTGCCTCACTCTCACTCCCATACTGCCGCCCAGATCCTACCACCTCTCAACCGCCAGCTCGCTGGTCAATATTACCATTTCGGCGCCGCTTCTTCCAATGCTATTGATAATCAACCTGATACCGTCGTTGTTAAACCTCTGAAATCAAAGCAGAAGGGCGTCATGTATAACAATGTGGTTAAATCGAATGACTACATTCATGATGAGGGGTCTTCAAAAGATGCTCTTAGTTGTGTTCAAACACCTGTGTCTGCAAAAGGAGGAAGGGCGTACAACAAGTCAAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCTGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAGGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAAGGATTTAATCAACAAATTCCAGGAAATGTGGATAGTGACGCTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATTTGAGTGAAGATGAAAATATCCAAAAGTGGCTGTTCGTAACAGAAGACGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACAATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTGCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCAGGATCAAATGAACATCTAGCAACAGAAGCAATCATTGGGGAGAGTAGTAGAAACGAAATTGAACCTCTAGCTCATCTGTCCCAACACAGCAGCAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGAGGAATGATGAAGATTCTTCCTTCAGATATTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTCAGCATTACAGATATGTGGAGAACAGATTATATTGCATGGGATCAATCAGATATGGTTACTCATGACTTCTTAATATCTGATGTCAATACTCAAAGGTCAAGACTAGGAAGCCCACACTCAGAGACAGCTGAAGCACCATCTGATGTTAACTTAAGACAGAGGTGA 1392 41.45 MRGASRAPNPSEPLPHSHSHTAAQILPPLNRQLAGQYYHFGAASSNAIDNQPDTVVVKPLKSKQKGVMYNNVVKSNDYIHDEGSSKDALSCVQTPVSAKGGRAYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNQQIPGNVDSDASMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDENIQKWLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLATEAIIGESSRNEIEPLAHLSQHSSSCDVNGSNEFPGGMMKILPSDIDNDADYWLLSDAEVSITDMWRTDYIAWDQSDMVTHDFLISDVNTQRSRLGSPHSETAEAPSDVNLRQR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8203952 8210580 + MELO3C024578.2.1 Cme08g01161 335424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01161 463 Pfam E2F/DP family winged-helix DNA-binding domain 139 202 IPR003316 GO:0005667|GO:0006355
Cme08g01161 463 PANTHER TRANSCRIPTION FACTOR E2FB 23 451 - -
Cme08g01161 463 MobiDBLite consensus disorder prediction 103 128 - -
Cme08g01161 463 PANTHER TRANSCRIPTION FACTOR E2F 23 451 IPR015633 GO:0000978|GO:0006357
Cme08g01161 463 SUPERFAMILY Winged helix DNA-binding domain 137 200 IPR036390 -
Cme08g01161 463 Gene3D - 209 319 - -
Cme08g01161 463 Coils Coil 222 249 - -
Cme08g01161 463 Pfam E2F transcription factor CC-MB domain 218 318 IPR032198 GO:0046983
Cme08g01161 463 SUPERFAMILY E2F-DP heterodimerization region 216 319 IPR037241 -
Cme08g01161 463 Gene3D - 131 205 IPR036388 -
Cme08g01161 463 MobiDBLite consensus disorder prediction 99 128 - -
Cme08g01161 463 SMART E2F_TDP_2 137 202 IPR003316 GO:0005667|GO:0006355
Cme08g01161 463 MobiDBLite consensus disorder prediction 441 463 - -
Cme08g01161 463 CDD E2F_DD 218 319 IPR032198 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01161 K06620 E2F3; transcription factor E2F3 - csv:101212480 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00246 Cme-Chr5:1809326 Cme08g01161 Cme-Chr8:8203952 5.48E-162 dispersed
Cme08g01161 Cme-Chr8:8203952 Cme12g01722 Cme-Chr12:24006819 1.15E-06 dispersed
Cme08g01161 Cme-Chr8:8203952 Cme08g01162 Cme-Chr8:8209889 1.88E-14 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01722 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.6 2.3e-105 379.4
Cme07g01183 . 4 185 E2F-DP Transcription Factor Family AT5G02470 56.0 7.1e-56 214.5
Cme05g00246 . 21 419 E2F-DP Transcription Factor Family AT2G36010 57.0 2.7e-116 416.0
Cme08g01161 . 21 439 E2F-DP Transcription Factor Family AT2G36010 53.2 2.2e-110 396.4
Cme05g00246 . 20 419 E2F-DP Transcription Factor Family AT5G22220 60.3 3.8e-112 402.1
Cme08g01161 . 11 431 E2F-DP Transcription Factor Family AT5G22220 50.2 4.0e-93 339.0
Cme07g01183 . 4 185 E2F-DP Transcription Factor Family AT5G02470 56.0 7.1e-56 214.5
Cme05g00246 . 20 419 E2F-DP Transcription Factor Family AT5G22220 60.3 3.8e-112 402.1
Cme08g01161 . 11 431 E2F-DP Transcription Factor Family AT5G22220 50.2 4.0e-93 339.0
Cme05g00246 . 21 419 E2F-DP Transcription Factor Family AT2G36010 57.0 2.7e-116 416.0
Cme08g01161 . 21 439 E2F-DP Transcription Factor Family AT2G36010 53.2 2.2e-110 396.4
Cme12g01722 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.6 2.3e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41846 PF16421 E2F_CC-MB 5.00E-33 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme08g01161 Cme_Chr08 FPKM 4.255716 4.528205 5.099216 4.733799 6.313076 5.884451 6.156085 6.103242 6.730601 6.616992