Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g01206 ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGTCACCGTCTCTGCGCCAATAACTGTGGATTCTTTGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTATAGAGATTTCCGTCTTAAAGAACAAGAACAAGCCTCCACAAAGTCCACCATCCAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCTTCCTCTTCCCCAATCGATCCTCCCCCTGTTCCTCCTGTTGTCGCCTTGTCCCTGCCGGACACCACCACAGATCTGACCATCCCTCCCCTTGCGGCGGTCGGATCTGATGTCACAAACCCCAGCCCGAGCCCGAGCCCGAACCGTTGTTCATCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAAATGCAGATGTGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGACTTCAAGTCAATCGGAAGAGAGGAGATTGCTCGAGCAAACCCCGTCGTCAAAGCCGACAAACTAGAGAGGATTTGA 522 54.41 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDFRLKEQEQASTKSTIQAALSASSSPSPSSSPIDPPPVPPVVALSLPDTTTDLTIPPLAAVGSDVTNPSPSPSPNRCSSCRKKVGLTGFKCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8505068 8506504 - MELO3C024538.2.1 Cme08g01206 335469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g01206 173 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Cme08g01206 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270
Cme08g01206 173 MobiDBLite consensus disorder prediction 47 65 - -
Cme08g01206 173 Gene3D - 96 169 IPR035896 -
Cme08g01206 173 MobiDBLite consensus disorder prediction 92 111 - -
Cme08g01206 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270
Cme08g01206 173 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Cme08g01206 173 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 1 173 - -
Cme08g01206 173 MobiDBLite consensus disorder prediction 47 86 - -
Cme08g01206 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Cme08g01206 173 Gene3D - 1 69 - -
Cme08g01206 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 173 - -
Cme08g01206 173 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Cme08g01206 173 MobiDBLite consensus disorder prediction 66 80 - -
Cme08g01206 173 SUPERFAMILY AN1-like Zinc finger 102 168 IPR035896 -
Cme08g01206 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00146 Cme-Chr5:990952 Cme08g01206 Cme-Chr8:8505068 2.07E-43 dispersed
Cme06g00925 Cme-Chr6:6487973 Cme08g01206 Cme-Chr8:8505068 9.13E-31 dispersed
Cme08g01206 Cme-Chr8:8505068 Cme11g01922 Cme-Chr11:27311260 4.82E-56 dispersed
Cme08g01206 Cme-Chr8:8505068 Cme01g02485 Cme-Chr1:32943566 1.27E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g01206 - - csv:101211758 298.516